Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AAC934_RS18215 Genome accession   NZ_CP152362
Coordinates   3534784..3535473 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain LP     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3529784..3540473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS18180 (AAC934_18180) flgN 3529964..3530446 (-) 483 WP_003227999.1 flagellar protein FlgN -
  AAC934_RS18185 (AAC934_18185) flgM 3530462..3530728 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAC934_RS18190 (AAC934_18190) yvyF 3530809..3531228 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  AAC934_RS18195 (AAC934_18195) comFC 3531302..3532024 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  AAC934_RS18200 (AAC934_18200) comFB 3531988..3532284 (-) 297 WP_015483764.1 late competence protein ComFB -
  AAC934_RS18205 (AAC934_18205) comFA 3532344..3533735 (-) 1392 WP_342623795.1 ATP-dependent helicase ComFA Machinery gene
  AAC934_RS18210 (AAC934_18210) fakBA 3533841..3534686 (-) 846 WP_003244125.1 DegV family protein -
  AAC934_RS18215 (AAC934_18215) degU 3534784..3535473 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAC934_RS18220 (AAC934_18220) degS 3535556..3536713 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AAC934_RS18225 (AAC934_18225) yvyE 3536930..3537583 (+) 654 WP_003227979.1 YigZ family protein -
  AAC934_RS18230 (AAC934_18230) tagV 3537583..3538758 (+) 1176 WP_038429732.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  AAC934_RS18235 (AAC934_18235) tagO 3538831..3539907 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=988643 AAC934_RS18215 WP_003219701.1 3534784..3535473(-) (degU) [Bacillus subtilis strain LP]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=988643 AAC934_RS18215 WP_003219701.1 3534784..3535473(-) (degU) [Bacillus subtilis strain LP]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment