Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AAC934_RS18195 Genome accession   NZ_CP152362
Coordinates   3531302..3532024 (-) Length   240 a.a.
NCBI ID   WP_029725992.1    Uniprot ID   -
Organism   Bacillus subtilis strain LP     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3526302..3537024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS18160 (AAC934_18160) fliW 3526441..3526872 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  AAC934_RS18165 (AAC934_18165) yviE 3526893..3527468 (-) 576 WP_015384781.1 DUF6470 family protein -
  AAC934_RS18170 (AAC934_18170) flgL 3527515..3528411 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  AAC934_RS18175 (AAC934_18175) flgK 3528422..3529945 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  AAC934_RS18180 (AAC934_18180) flgN 3529964..3530446 (-) 483 WP_003227999.1 flagellar protein FlgN -
  AAC934_RS18185 (AAC934_18185) flgM 3530462..3530728 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAC934_RS18190 (AAC934_18190) yvyF 3530809..3531228 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  AAC934_RS18195 (AAC934_18195) comFC 3531302..3532024 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  AAC934_RS18200 (AAC934_18200) comFB 3531988..3532284 (-) 297 WP_015483764.1 late competence protein ComFB -
  AAC934_RS18205 (AAC934_18205) comFA 3532344..3533735 (-) 1392 WP_342623795.1 ATP-dependent helicase ComFA Machinery gene
  AAC934_RS18210 (AAC934_18210) fakBA 3533841..3534686 (-) 846 WP_003244125.1 DegV family protein -
  AAC934_RS18215 (AAC934_18215) degU 3534784..3535473 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAC934_RS18220 (AAC934_18220) degS 3535556..3536713 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27433.73 Da        Isoelectric Point: 9.4913

>NTDB_id=988641 AAC934_RS18195 WP_029725992.1 3531302..3532024(-) (comFC) [Bacillus subtilis strain LP]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=988641 AAC934_RS18195 WP_029725992.1 3531302..3532024(-) (comFC) [Bacillus subtilis strain LP]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment