Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AAC934_RS12645 | Genome accession | NZ_CP152362 |
| Coordinates | 2472935..2473270 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain LP | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2467935..2478270
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAC934_RS12625 (AAC934_12625) | gcvT | 2468527..2469615 (-) | 1089 | WP_015714248.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AAC934_RS12630 (AAC934_12630) | yqhH | 2470057..2471730 (+) | 1674 | WP_003230203.1 | SNF2-related protein | - |
| AAC934_RS12635 (AAC934_12635) | yqhG | 2471751..2472545 (+) | 795 | WP_015714249.1 | YqhG family protein | - |
| AAC934_RS12640 (AAC934_12640) | sinI | 2472728..2472901 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| AAC934_RS12645 (AAC934_12645) | sinR | 2472935..2473270 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| AAC934_RS12650 (AAC934_12650) | tasA | 2473363..2474148 (-) | 786 | WP_015714250.1 | biofilm matrix protein TasA | - |
| AAC934_RS12655 (AAC934_12655) | sipW | 2474212..2474784 (-) | 573 | WP_003230181.1 | signal peptidase I | - |
| AAC934_RS12660 (AAC934_12660) | tapA | 2474768..2475529 (-) | 762 | WP_015714251.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AAC934_RS12665 (AAC934_12665) | yqzG | 2475801..2476127 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| AAC934_RS12670 (AAC934_12670) | spoIIT | 2476169..2476348 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| AAC934_RS12675 (AAC934_12675) | comGG | 2476419..2476793 (-) | 375 | WP_015714252.1 | ComG operon protein ComGG | Machinery gene |
| AAC934_RS12680 (AAC934_12680) | comGF | 2476794..2477177 (-) | 384 | WP_038429292.1 | ComG operon protein ComGF | Machinery gene |
| AAC934_RS12685 (AAC934_12685) | comGE | 2477203..2477550 (-) | 348 | WP_015714254.1 | ComG operon protein 5 | Machinery gene |
| AAC934_RS12690 (AAC934_12690) | comGD | 2477534..2477965 (-) | 432 | WP_014480256.1 | comG operon protein ComGD | Machinery gene |
| AAC934_RS12695 (AAC934_12695) | comGC | 2477955..2478251 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=988615 AAC934_RS12645 WP_003226345.1 2472935..2473270(+) (sinR) [Bacillus subtilis strain LP]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=988615 AAC934_RS12645 WP_003226345.1 2472935..2473270(+) (sinR) [Bacillus subtilis strain LP]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |