Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AAG563_RS21245 Genome accession   NZ_CP152341
Coordinates   4725605..4726012 (-) Length   135 a.a.
NCBI ID   WP_007929962.1    Uniprot ID   A0AAJ0ZLS6
Organism   Pseudomonas chlororaphis strain NCIMB_15121     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4720605..4731012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG563_RS21230 (AAG563_21230) - 4722484..4724520 (-) 2037 WP_225970801.1 methyl-accepting chemotaxis protein -
  AAG563_RS21235 (AAG563_21235) - 4724645..4725184 (-) 540 WP_009046016.1 chemotaxis protein CheW -
  AAG563_RS21240 (AAG563_21240) pilH 4725196..4725561 (-) 366 WP_007929961.1 twitching motility response regulator PilH -
  AAG563_RS21245 (AAG563_21245) pilG 4725605..4726012 (-) 408 WP_007929962.1 twitching motility response regulator PilG Regulator
  AAG563_RS21250 (AAG563_21250) gshB 4726249..4727205 (+) 957 WP_009046017.1 glutathione synthase -
  AAG563_RS21255 (AAG563_21255) - 4727326..4728225 (+) 900 WP_009046018.1 energy transducer TonB -
  AAG563_RS21260 (AAG563_21260) - 4728450..4729019 (+) 570 WP_007929972.1 YqgE/AlgH family protein -
  AAG563_RS21265 (AAG563_21265) ruvX 4729019..4729456 (+) 438 WP_009046019.1 Holliday junction resolvase RuvX -
  AAG563_RS21270 (AAG563_21270) pyrR 4729577..4730083 (+) 507 WP_007929976.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14681.06 Da        Isoelectric Point: 7.2445

>NTDB_id=988473 AAG563_RS21245 WP_007929962.1 4725605..4726012(-) (pilG) [Pseudomonas chlororaphis strain NCIMB_15121]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFEALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=988473 AAG563_RS21245 WP_007929962.1 4725605..4726012(-) (pilG) [Pseudomonas chlororaphis strain NCIMB_15121]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCCGAAACGCTGCT
GAAGAATGTGGGCTGTGAAGTCATCACCGCGGTCGACGGTTTCGAGGCCCTGGCCAAGATCGCCGACAACCACCCGGGCA
TCATTTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCGTTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGCCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385

Multiple sequence alignment