Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   R8568_RS09725 Genome accession   NZ_AP026931
Coordinates   1895804..1896757 (-) Length   317 a.a.
NCBI ID   WP_000345101.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701541     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1890804..1901757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8568_RS09695 (PC1520_18880) - 1891565..1892188 (-) 624 WP_000932635.1 hypothetical protein -
  R8568_RS09700 (PC1520_18890) jag 1892239..1893225 (-) 987 WP_000260017.1 RNA-binding cell elongation regulator Jag/EloR -
  R8568_RS09705 (PC1520_18900) - 1893244..1894068 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  R8568_RS09710 (PC1520_18910) rnpA 1894043..1894414 (-) 372 WP_000739246.1 ribonuclease P protein component -
  R8568_RS09715 - 1894431..1894562 (-) 132 WP_000768904.1 hypothetical protein -
  R8568_RS09720 (PC1520_18920) - 1894563..1895753 (-) 1191 WP_000167766.1 acetate kinase -
  R8568_RS09725 (PC1520_18930) comYH 1895804..1896757 (-) 954 WP_000345101.1 class I SAM-dependent methyltransferase Machinery gene
  R8568_RS09730 - 1896818..1897412 (-) 595 Protein_1892 class I SAM-dependent methyltransferase -
  R8568_RS09735 (PC1520_18960) comGG/cglG 1897549..1897962 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8568_RS09740 (PC1520_18970) comGF/cglF 1897940..1898401 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8568_RS09745 (PC1520_18980) comGE/cglE 1898364..1898666 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8568_RS09750 (PC1520_18990) comGD/cglD 1898629..1899033 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8568_RS09755 (PC1520_19000) comGC/cglC 1899026..1899352 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  R8568_RS09760 (PC1520_19010) comGB/cglB 1899354..1900370 (-) 1017 WP_078375398.1 competence type IV pilus assembly protein ComGB Machinery gene
  R8568_RS09765 (PC1520_19020) comGA/cglA/cilD 1900318..1901259 (-) 942 WP_000249567.1 competence type IV pilus ATPase ComGA Machinery gene
  R8568_RS09770 (PC1520_19030) - 1901335..1901700 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35717.95 Da        Isoelectric Point: 4.2995

>NTDB_id=98847 R8568_RS09725 WP_000345101.1 1895804..1896757(-) (comYH) [Streptococcus pneumoniae strain PZ900701541]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYTHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=98847 R8568_RS09725 WP_000345101.1 1895804..1896757(-) (comYH) [Streptococcus pneumoniae strain PZ900701541]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACACCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment