Detailed information NTG0988469

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AAG563_RS18920
• Genome accession: NZ_CP152341
• Coordinates: 4229768..4231096 (+)
• Length: 442 a.a.
• NCBI ID: WP_009045696.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain NCIMB_15121
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4224768..4236096

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG563_RS18900 (AAG563_18900)	pgeF	4226257..4226982 (-)	726	WP_009045694.1	peptidoglycan editing factor PgeF	-
AAG563_RS18905 (AAG563_18905)	rluD	4226979..4227941 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
AAG563_RS18910 (AAG563_18910)	-	4228093..4229115 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
AAG563_RS18915 (AAG563_18915)	-	4229250..4229477 (+)	228	WP_009045695.1	PP0621 family protein	-
AAG563_RS18920 (AAG563_18920)	pilR	4229768..4231096 (+)	1329	WP_009045696.1	sigma-54 dependent transcriptional regulator	Regulator
AAG563_RS18925 (AAG563_18925)	thiO	4231093..4232193 (-)	1101	WP_009045697.1	glycine oxidase ThiO	-
AAG563_RS18930 (AAG563_18930)	-	4232248..4232649 (-)	402	WP_007924724.1	type IV pilin protein	-
AAG563_RS18935 (AAG563_18935)	-	4232663..4235734 (-)	3072	WP_009045698.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48801.32 Da
• Isoelectric Point: 9.4080

>NTDB_id=988469 AAG563_RS18920 WP_009045696.1 4229768..4231096(+) (pilR) [Pseudomonas chlororaphis strain NCIMB_15121]
MSPRQKVLIVDDDPGIREYLEISLGRMQHHTRSARTLGEARHWLAREGFDLCLSDLYLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAVHALKAGAIDFLSKPVALARLRELLNGALPGSTPPNPASGPLLGDSAAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHEQGPRASRAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALLAEVHAGRFRQDLYYRLNVIELPVPALRARKADIEPLATAILE
RLAQGNGQQLARLQPSALQVLQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGPAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=988469 AAG563_RS18920 WP_009045696.1 4229768..4231096(+) (pilR) [Pseudomonas chlororaphis strain NCIMB_15121]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACACCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGTATTTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGTCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCACGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCTTGCGCGAGCTGCTGAATGGCGCCCTGCCCGGATCGACACCACCGAACCCTGCTAGCGGCCCATTGC
TCGGCGATTCAGCCGCCATGCACAAACTGCGTGGACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGAGCAGGGTCCTCGAGCCAGCCGCGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCGA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCACTGCAGGAGAAGGCGGTACGTTGCGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
ACGCATTCTCTGCGCCACCCACAAGGCGTTGCTGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCAAGTGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACTTGCTCGAACGGGCACACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACACCAAACGGCGCCCACCCGGCCATCACGCCCGGACCGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGACTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCTT
GTCGTTTCGTTCGATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.946	100	0.681
pilR	Acinetobacter baumannii strain A118	43.818	100	0.457