Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AAGS35_RS20800 | Genome accession | NZ_CP152338 |
| Coordinates | 4283370..4284170 (+) | Length | 266 a.a. |
| NCBI ID | WP_004213441.1 | Uniprot ID | A0A9Q4U0T4 |
| Organism | Klebsiella pneumoniae strain MRSN972095 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4278370..4289170
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAGS35_RS20765 (AAGS35_20765) | gspH | 4278526..4279041 (+) | 516 | WP_004213437.1 | type II secretion system minor pseudopilin GspH | - |
| AAGS35_RS20770 (AAGS35_20770) | gspI | 4279038..4279403 (+) | 366 | WP_002889025.1 | type II secretion system minor pseudopilin GspI | - |
| AAGS35_RS20775 (AAGS35_20775) | gspJ | 4279400..4279996 (+) | 597 | WP_022615423.1 | type II secretion system minor pseudopilin GspJ | - |
| AAGS35_RS20780 (AAGS35_20780) | gspK | 4279993..4280979 (+) | 987 | WP_004213439.1 | type II secretion system minor pseudopilin GspK | - |
| AAGS35_RS20785 (AAGS35_20785) | gspL | 4280966..4282159 (+) | 1194 | WP_004213440.1 | type II secretion system protein GspL | - |
| AAGS35_RS20790 (AAGS35_20790) | - | 4282152..4282637 (+) | 486 | WP_004151943.1 | type II secretion system protein M | - |
| AAGS35_RS20795 (AAGS35_20795) | - | 4282627..4283373 (+) | 747 | WP_004145897.1 | type II secretion system protein N | - |
| AAGS35_RS20800 (AAGS35_20800) | pilD | 4283370..4284170 (+) | 801 | WP_004213441.1 | A24 family peptidase | Machinery gene |
| AAGS35_RS20805 (AAGS35_20805) | hrpB | 4284218..4286647 (-) | 2430 | WP_004213442.1 | ATP-dependent helicase HrpB | - |
| AAGS35_RS20810 (AAGS35_20810) | thpR | 4286720..4287256 (+) | 537 | WP_004177389.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| AAGS35_RS20815 (AAGS35_20815) | sfsA | 4287256..4287972 (+) | 717 | WP_002888848.1 | DNA/RNA nuclease SfsA | - |
| AAGS35_RS20820 (AAGS35_20820) | dksA | 4288135..4288590 (+) | 456 | WP_002888845.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 266 a.a. Molecular weight: 29405.01 Da Isoelectric Point: 8.8894
>NTDB_id=988419 AAGS35_RS20800 WP_004213441.1 4283370..4284170(+) (pilD) [Klebsiella pneumoniae strain MRSN972095]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV
Nucleotide
Download Length: 801 bp
>NTDB_id=988419 AAGS35_RS20800 WP_004213441.1 4283370..4284170(+) (pilD) [Klebsiella pneumoniae strain MRSN972095]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
49.434 |
99.624 |
0.492 |
| pilD | Vibrio campbellii strain DS40M4 |
46.182 |
100 |
0.477 |
| pilD | Acinetobacter nosocomialis M2 |
46.008 |
98.872 |
0.455 |
| pilD | Acinetobacter baumannii D1279779 |
45.247 |
98.872 |
0.447 |
| pilD | Neisseria gonorrhoeae MS11 |
43.295 |
98.12 |
0.425 |