Detailed information NTG0988233

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAD080_RS13090
• Genome accession: NZ_CP152307
• Coordinates: 2898560..2899429 (+)
• Length: 289 a.a.
• NCBI ID: WP_225250281.1
• Uniprot ID: -
• Organism: Vibrio tritonius strain JCM 16457 isolate MA35
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2893560..2904429

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAD080_RS13070	nadC	2894091..2894978 (+)	888	WP_342607597.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AAD080_RS13075	-	2895179..2895598 (+)	420	WP_342607598.1	pilin	-
AAD080_RS13080	-	2895595..2897256 (+)	1662	WP_342607599.1	ATPase, T2SS/T4P/T4SS family	-
AAD080_RS13085	-	2897249..2898466 (+)	1218	WP_342607600.1	type II secretion system F family protein	-
AAD080_RS13090	pilD	2898560..2899429 (+)	870	WP_225250281.1	A24 family peptidase	Machinery gene
AAD080_RS13095	coaE	2899431..2900039 (+)	609	WP_342607601.1	dephospho-CoA kinase	-
AAD080_RS13100	zapD	2900071..2900811 (+)	741	WP_068715019.1	cell division protein ZapD	-
AAD080_RS13105	yacG	2900853..2901047 (+)	195	WP_068715021.1	DNA gyrase inhibitor YacG	-
AAD080_RS13110	-	2901115..2901747 (+)	633	WP_342607602.1	sigma-70 family RNA polymerase sigma factor	-
AAD080_RS13115	-	2901744..2901950 (+)	207	WP_342607603.1	zf-HC2 domain-containing protein	-
AAD080_RS13120	-	2902037..2902312 (+)	276	WP_068715027.1	DUF2282 domain-containing protein	-
AAD080_RS13125	-	2902332..2903216 (+)	885	WP_342607604.1	DUF692 domain-containing protein	-
AAD080_RS13130	-	2903200..2903958 (+)	759	WP_342607605.1	DNA-binding domain-containing protein	-
AAD080_RS13135	-	2903952..2904416 (+)	465	WP_342607606.1	DoxX family protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32695.89 Da
• Isoelectric Point: 7.2368

>NTDB_id=988233 AAD080_RS13090 WP_225250281.1 2898560..2899429(+) (pilD) [Vibrio tritonius strain JCM 16457 isolate MA35]
MDIFLYYPWIFTLFATVFGLIIGSFLNVVIHRLPRIMEQEWRQECAESFPEYNIAPPEQLLSLSKPRSRCPKCHTQIRAI
DNIPVVSWLLLKGRCHHCHEPISARYPCVEIITALACYLLANQFGYGPYTLGLMFFTFVLIAATFIDFDTLLLPDQLTLP
LLWVGLAMALLGFTSITLTDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILLSSLVGL
CFGLVQLKLQKQGLEKAFPFGPYLAIAGWISLLWGNSIIDWYLRSFLGW

Nucleotide

• Length: 870 bp

>NTDB_id=988233 AAD080_RS13090 WP_225250281.1 2898560..2899429(+) (pilD) [Vibrio tritonius strain JCM 16457 isolate MA35]
ATGGACATTTTTCTATATTACCCTTGGATATTTACTCTGTTTGCTACCGTATTTGGTTTAATCATCGGCAGCTTTCTTAA
CGTTGTGATTCACCGCTTACCTCGTATCATGGAGCAAGAATGGCGCCAAGAGTGTGCAGAAAGCTTTCCGGAATACAACA
TAGCGCCGCCAGAGCAATTACTTTCGCTAAGCAAACCACGTTCTCGCTGTCCAAAGTGTCACACCCAGATCCGAGCAATT
GATAATATTCCTGTTGTCAGTTGGTTATTGCTTAAAGGACGCTGTCATCATTGTCACGAGCCGATTTCTGCTCGCTATCC
CTGTGTAGAAATAATAACAGCGCTCGCGTGCTACCTCTTGGCTAACCAGTTTGGTTACGGCCCATACACCCTTGGACTGA
TGTTTTTTACCTTCGTCTTAATCGCAGCGACCTTTATCGACTTTGATACCCTTCTTTTGCCGGATCAACTCACCTTACCT
CTATTGTGGGTTGGATTGGCGATGGCATTATTGGGATTTACCTCTATCACTCTCACAGACGCAGTGATTGGAGCAATGGC
CGGATATTTGGTGTTATGGTCTCTCTACTGGGCATTTAAATTACTAACGGGAAAAGAAGGCATGGGCTATGGTGACTTTA
AGTTGCTCGCGGCATTAGGCGCATGGTTAGGTTGGCAACAATTGCCGATTATTATCCTACTCTCTTCTTTGGTTGGCCTG
TGCTTTGGTCTAGTGCAATTAAAACTGCAAAAACAAGGATTAGAGAAAGCATTCCCGTTTGGCCCTTATCTAGCAATAGC
AGGATGGATTAGTCTACTTTGGGGTAACTCGATCATCGATTGGTATTTGCGTTCATTTTTAGGTTGGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	70.139	99.654	0.699
pilD	Vibrio cholerae strain A1552	69.444	99.654	0.692
pilD	Acinetobacter nosocomialis M2	52.632	92.042	0.484
pilD	Acinetobacter baumannii D1279779	51.88	92.042	0.478
pilD	Neisseria gonorrhoeae MS11	47.253	94.464	0.446