Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   AAD080_RS13020 Genome accession   NZ_CP152307
Coordinates   2881070..2881687 (+) Length   205 a.a.
NCBI ID   WP_068714989.1    Uniprot ID   -
Organism   Vibrio tritonius strain JCM 16457 isolate MA35     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2876070..2886687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAD080_RS12995 panC 2876573..2877451 (+) 879 WP_068714979.1 pantoate--beta-alanine ligase -
  AAD080_RS13000 - 2877521..2878291 (-) 771 WP_342607591.1 ABC transporter permease -
  AAD080_RS13005 - 2878300..2879214 (-) 915 WP_342607592.1 ABC transporter ATP-binding protein -
  AAD080_RS13010 can 2879475..2880143 (+) 669 WP_068714985.1 carbonate dehydratase -
  AAD080_RS13015 hpt 2880210..2880740 (-) 531 WP_068714987.1 hypoxanthine phosphoribosyltransferase -
  AAD080_RS13020 hapR 2881070..2881687 (+) 618 WP_068714989.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  AAD080_RS13025 lpdA 2881798..2883225 (-) 1428 WP_342607593.1 dihydrolipoyl dehydrogenase -
  AAD080_RS13030 aceF 2883471..2885339 (-) 1869 WP_342607594.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23530.77 Da        Isoelectric Point: 5.5974

>NTDB_id=988232 AAD080_RS13020 WP_068714989.1 2881070..2881687(+) (hapR) [Vibrio tritonius strain JCM 16457 isolate MA35]
MDASIEKRPRTRLSPQKRKHQLMEIALEVFAKRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDDVLTFVVRQFSNFL
TDNIDLDLPARQNLSTISDGIVNLAIDDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQMLLKNMFAKAIERGELSSDYDA
EDMATLFHGICYSLFVQANRVRNESSVHKLVNHYLDMLCIYNEVA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=988232 AAD080_RS13020 WP_068714989.1 2881070..2881687(+) (hapR) [Vibrio tritonius strain JCM 16457 isolate MA35]
ATGGATGCTTCAATAGAAAAACGCCCAAGAACCCGTTTATCACCTCAAAAACGTAAACATCAGCTAATGGAAATAGCGTT
AGAAGTGTTTGCAAAACGTGGTATTGGTCGTGGTGGTCACGCAGATATTGCCGATATAGCGCAAGTATCAGTGGCAACAG
TATTTAACTACTTCCCAACTCGCGAAGATCTCGTCGATGACGTATTGACCTTCGTAGTTCGTCAATTCTCTAACTTCCTA
ACTGACAACATCGACCTCGATCTACCTGCTCGCCAAAATTTGTCGACCATCTCAGATGGTATCGTCAACTTAGCGATTGA
TGATTGTCACTGGCTAAAAGTATGGTTTGAATGGAGCGCTTCAACTCGTGATGAAGTATGGCCTCTATTTGTATCGACTA
ATCGTACTAACCAGATGTTACTCAAAAACATGTTTGCAAAAGCGATCGAACGCGGTGAACTTAGCAGCGATTACGACGCA
GAAGACATGGCAACCTTGTTCCACGGTATTTGTTACTCCCTTTTCGTACAAGCTAACCGTGTCCGCAACGAAAGCAGTGT
TCACAAACTCGTGAATCACTACCTCGACATGCTATGTATCTATAACGAAGTGGCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

77.114

98.049

0.756
  hapR Vibrio cholerae strain A1552

77.114

98.049

0.756
  opaR Vibrio parahaemolyticus RIMD 2210633

76.382

97.073

0.741

Multiple sequence alignment