Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AAD080_RS10640 Genome accession   NZ_CP152307
Coordinates   2352349..2353758 (-) Length   469 a.a.
NCBI ID   WP_225251427.1    Uniprot ID   -
Organism   Vibrio tritonius strain JCM 16457 isolate MA35     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2347349..2358758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAD080_RS10600 - 2347478..2347894 (-) 417 WP_068714221.1 CBS domain-containing protein -
  AAD080_RS10605 moaE 2348060..2348521 (-) 462 WP_342607319.1 molybdopterin synthase catalytic subunit MoaE -
  AAD080_RS10610 moaD 2348523..2348768 (-) 246 WP_068714223.1 molybdopterin synthase sulfur carrier subunit -
  AAD080_RS10615 moaC 2348765..2349244 (-) 480 WP_068714224.1 cyclic pyranopterin monophosphate synthase MoaC -
  AAD080_RS10620 moaB 2349257..2349763 (-) 507 WP_342607320.1 molybdenum cofactor biosynthesis protein B -
  AAD080_RS10625 moaA 2349829..2350818 (-) 990 WP_068716036.1 GTP 3',8-cyclase MoaA -
  AAD080_RS10630 yvcK 2351125..2352015 (+) 891 WP_068716038.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  AAD080_RS10635 luxU 2352004..2352342 (-) 339 WP_342607321.1 quorum-sensing phosphorelay protein LuxU -
  AAD080_RS10640 luxO 2352349..2353758 (-) 1410 WP_225251427.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AAD080_RS10645 uvrB 2354040..2356070 (-) 2031 WP_342607322.1 excinuclease ABC subunit UvrB -
  AAD080_RS10655 - 2356916..2357092 (+) 177 WP_342607323.1 hypothetical protein -
  AAD080_RS10660 - 2357086..2357136 (+) 51 Protein_2033 hypothetical protein -
  AAD080_RS10665 - 2357281..2357397 (+) 117 WP_342608754.1 hypothetical protein -
  AAD080_RS10670 - 2357502..2357972 (+) 471 WP_342607324.1 tyrosine-type recombinase/integrase -
  AAD080_RS10675 - 2358049..2358369 (+) 321 WP_342607325.1 IS66 family insertion sequence element accessory protein TnpB -
  AAD080_RS10680 tnpB 2358366..2358719 (+) 354 WP_342607326.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52396.01 Da        Isoelectric Point: 5.7295

>NTDB_id=988230 AAD080_RS10640 WP_225251427.1 2352349..2353758(-) (luxO) [Vibrio tritonius strain JCM 16457 isolate MA35]
MQLEYPTQKAKYLLMVEDTASVAALYRSYLLPLEIDIKVVGTGREAIESIAQREPDLILLDLRLPDMTGMDVLHAVKLKH
PDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNETDDPREQNYQGFIGSSQTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAVHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAEAADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLSSEVVERFQHYGWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNRPIEPRV
EVISEKVESGTLSVHDIFPLWLTEKQAIEKAIEACDGNIPKAAGYLDVSPSTIYRKLQSWNEKEKEKEK

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=988230 AAD080_RS10640 WP_225251427.1 2352349..2353758(-) (luxO) [Vibrio tritonius strain JCM 16457 isolate MA35]
ATGCAATTAGAATACCCAACTCAAAAAGCAAAATATCTGCTCATGGTTGAGGATACCGCATCGGTAGCGGCACTGTACCG
TTCTTATCTATTGCCTTTAGAAATTGATATTAAGGTGGTAGGGACTGGACGAGAAGCTATCGAAAGTATTGCTCAACGAG
AGCCGGACTTGATCCTTCTTGACTTACGTTTACCGGATATGACTGGTATGGACGTATTACATGCAGTAAAACTCAAGCAT
CCAGATGTGCCAGTGGTCTTTATGACGGCGCATGGCTCGATAGATACTGCTGTAGAAGCAATGCGACATGGCGCACAAGA
CTTCTTAATCAAACCCTGCGAAGCAGACCGCTTACGTGTCACAGTGAACAACGCAATTCGTAAAGCAAGTAAGCTTAAGA
ATGAAACGGATGACCCGCGTGAACAAAATTACCAAGGTTTTATCGGTAGTAGTCAGACCATGCAAGCAGTTTACCGAACT
ATCGACTCTGCGGCATCGAGTAAGGCAAGTATCTTTATTACGGGTGAAAGTGGTACTGGTAAAGAAGTGTGTGCTGAGGC
TGTTCATGCGGCGAGTAAACGGGGCGATAAACCTTTTATTGCGATCAACTGTGCAGCGATTCCCAAAGACTTGATCGAAA
GTGAACTGTTTGGTCATGTGAAAGGCGCATTTACTGGCGCTGCAACGGATCGCCAAGGGGCGGCAGAGGCTGCCGATGGT
GGTACGCTGTTTCTGGATGAATTGTGCGAAATGGATTTGGATCTGCAAACCAAATTACTGCGCTTTATCCAAACTGGCAC
CTTCCAGAAGGTAGGCTCTTCTAAAATGAAGAGCGTTGATGTGCGTTTTGTTTGTGCAACTAACCGTGACCCATGGAAAG
AGGTCCAAGAAGGTCGCTTCCGAGAAGATTTGTACTATCGTTTATACGTTATCCCGTTGCACTTACCACCACTGCGCGAA
CGTGGTGATGATGTGATTGAAATTGCTTACTCATTGCTTGGCTTTATGTCAAAAGAGGAGGGCAAAGGGTTTGTTCGTCT
TTCATCAGAAGTTGTCGAGCGATTCCAGCATTATGGTTGGCCAGGTAACGTGCGGCAGTTGCAAAACGTATTACGAAATG
TGGTGGTATTAAATGAGGGTCGTGAAATTACCCTCAATATGTTACCGCCACCGTTAAACCGTCCCATAGAACCTCGCGTA
GAAGTGATCTCTGAAAAAGTAGAAAGCGGCACATTATCAGTACACGATATTTTTCCGTTATGGTTAACAGAAAAACAGGC
TATCGAGAAAGCGATTGAAGCTTGTGATGGCAATATTCCTAAAGCTGCGGGGTATTTGGATGTCAGTCCATCAACTATTT
ACCGCAAGTTACAAAGCTGGAATGAAAAAGAAAAAGAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

89.038

95.309

0.849
  pilR Pseudomonas aeruginosa PAK

38.667

95.949

0.371

Multiple sequence alignment