Detailed information NTG0988219

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AAD080_RS02535
• Genome accession: NZ_CP152307
• Coordinates: 542006..543007 (+)
• Length: 333 a.a.
• NCBI ID: WP_068712068.1
• Uniprot ID: -
• Organism: Vibrio tritonius strain JCM 16457 isolate MA35
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 537006..548007

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAD080_RS02500	ftsB	537114..537395 (+)	282	WP_068712059.1	cell division protein FtsB	-
AAD080_RS02505	ispD	537395..538096 (+)	702	WP_068712060.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AAD080_RS02510	ispF	538093..538569 (+)	477	WP_068712061.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AAD080_RS02515	truD	538589..539635 (+)	1047	WP_342608078.1	tRNA pseudouridine(13) synthase TruD	-
AAD080_RS02520	surE	539628..540383 (+)	756	WP_225250221.1	5'/3'-nucleotidase SurE	-
AAD080_RS02525	-	540388..541014 (+)	627	WP_068712066.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AAD080_RS02530	-	541014..541928 (+)	915	WP_342608079.1	peptidoglycan DD-metalloendopeptidase family protein	-
AAD080_RS02535	rpoS	542006..543007 (+)	1002	WP_068712068.1	RNA polymerase sigma factor RpoS	Regulator
AAD080_RS02540	mutS	543086..545650 (-)	2565	WP_342608080.1	DNA mismatch repair protein MutS	-
AAD080_RS02545	-	545735..546220 (+)	486	WP_342608081.1	CinA family protein	-
AAD080_RS02550	recA	546377..547426 (+)	1050	WP_342608082.1	recombinase RecA	Machinery gene
AAD080_RS02555	recX	547494..547964 (+)	471	WP_342608083.1	recombination regulator RecX	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 38330.15 Da
• Isoelectric Point: 4.4454

>NTDB_id=988219 AAD080_RS02535 WP_068712068.1 542006..543007(+) (rpoS) [Vibrio tritonius strain JCM 16457 isolate MA35]
MSISNTATKVENFEYDRDVIETDNELTTTSEESSNDTDSNDDVREEFDVSSKSLDATQMYLSEIGFSPLLTAEEEVLYAR
RALRGCEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQ
TRTIRLPIHVVKELNIYLRTARELSQRLDHEPTAEEIALELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDA
NNSDPEVSTQDDDIRDSLMNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQG
LSMESLFNVEVEM

Nucleotide

• Length: 1002 bp

>NTDB_id=988219 AAD080_RS02535 WP_068712068.1 542006..543007(+) (rpoS) [Vibrio tritonius strain JCM 16457 isolate MA35]
ATGAGTATCAGCAATACAGCCACTAAAGTTGAAAATTTCGAATATGACCGTGACGTAATTGAAACGGATAACGAATTAAC
AACAACTAGTGAAGAAAGTTCTAATGACACGGACAGCAATGATGATGTTCGCGAAGAGTTTGATGTTTCATCCAAAAGTT
TAGATGCAACACAGATGTATTTAAGCGAAATCGGCTTTTCTCCTTTGTTGACCGCAGAAGAAGAAGTTCTCTATGCACGC
CGCGCTTTGCGTGGTTGTGAAGCCGCCAGAAAACGTATGATCGAAAGTAACTTACGTTTAGTGGTTAAAATTTCTCGCCG
CTACAGTAATCGTGGTTTAGCTCTTCTGGATCTTATTGAAGAAGGTAACCTTGGTTTGATTCGAGCAGTGGAAAAATTCG
ACCCAGAACGCGGATTCCGTTTTTCAACTTACGCAACATGGTGGATTCGTCAAACGATTGAACGCGCTTTGATGAATCAA
ACTCGCACCATTCGCTTACCTATCCATGTTGTGAAAGAACTCAATATTTATCTGCGTACTGCTCGTGAACTATCACAACG
TTTAGACCATGAACCAACAGCGGAAGAGATCGCTCTTGAGCTTGATAAACCGGTTGATGATGTGAGCAAAATGCTTCGTT
TGAACGAACGTATTAGCTCTGTTGACACGCCAATCGGTGGTGATGGGGATAAAGCATTGCTGGATATTATTCCAGATGCA
AACAACTCAGATCCTGAAGTTTCTACTCAAGATGATGATATTCGTGATTCTCTAATGAATTGGTTAGATGAACTCAATCC
AAAACAGAAAGAAGTGTTAGCACGTCGTTTTGGCTTACTTGGCTATGAACCATCGACTCTTGAAGAGGTGGGACGTGAGA
TTAATCTAACCCGAGAACGAGTTCGTCAAATTCAAGTGGAAGGATTACGCCGTTTGAGAGAGATCCTGATGAAACAAGGC
TTAAGTATGGAATCTCTGTTCAACGTTGAAGTGGAAATGTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (55-85)

• Sigma-70, region 4 (Sigma70_r4) (261-314)

• Sigma-70 region 3 (Sigma70_r3) (173-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.688	100	0.877