Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   AAEU35_RS08115 Genome accession   NZ_CP152294
Coordinates   1640717..1641208 (+) Length   163 a.a.
NCBI ID   WP_023190262.1    Uniprot ID   A0AAW7J4W6
Organism   Lactococcus lactis strain Q13     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635717..1646208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS08100 rpsB 1636609..1637376 (+) 768 WP_010906340.1 30S ribosomal protein S2 -
  AAEU35_RS08105 tsf 1637498..1638526 (+) 1029 WP_317141378.1 translation elongation factor Ts -
  AAEU35_RS08110 ezrA 1638731..1640461 (+) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  AAEU35_RS08115 comX 1640717..1641208 (+) 492 WP_023190262.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19732.65 Da        Isoelectric Point: 5.8952

>NTDB_id=988184 AAEU35_RS08115 WP_023190262.1 1640717..1641208(+) (comX) [Lactococcus lactis strain Q13]
MTYYLEEEGFEILFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=988184 AAEU35_RS08115 WP_023190262.1 1640717..1641208(+) (comX) [Lactococcus lactis strain Q13]
ATGACATATTACTTGGAAGAAGAGGGTTTTGAAATTCTATTTTCAGAAATGAAACCTATAGTCATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGAATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.16

100

0.982
  comX Lactococcus lactis subsp. cremoris KW2

76.074

100

0.761

Multiple sequence alignment