Detailed information NTG0988141

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WMF93_RS03790
• Genome accession: NZ_CP152293
• Coordinates: 796913..797782 (-)
• Length: 289 a.a.
• NCBI ID: WP_342624207.1
• Uniprot ID: -
• Organism: Pseudomonas alkylphenolica strain IMGN1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 791913..802782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WMF93_RS03755 (WMF93_03755)	-	792170..793465 (-)	1296	WP_038606912.1	NAD(P)/FAD-dependent oxidoreductase	-
WMF93_RS03760 (WMF93_03760)	-	793550..793723 (-)	174	WP_342624203.1	DUF3094 family protein	-
WMF93_RS03765 (WMF93_03765)	-	793892..794521 (-)	630	WP_038606917.1	DUF1780 domain-containing protein	-
WMF93_RS03770 (WMF93_03770)	-	794602..795267 (-)	666	WP_342624204.1	hypothetical protein	-
WMF93_RS03775 (WMF93_03775)	-	795394..796083 (+)	690	WP_191831139.1	energy-coupling factor ABC transporter permease	-
WMF93_RS03780 (WMF93_03780)	yacG	796087..796293 (-)	207	WP_038606928.1	DNA gyrase inhibitor YacG	-
WMF93_RS03785 (WMF93_03785)	coaE	796290..796913 (-)	624	WP_342624205.1	dephospho-CoA kinase	-
WMF93_RS03790 (WMF93_03790)	pilD	796913..797782 (-)	870	WP_342624207.1	A24 family peptidase	Machinery gene
WMF93_RS03795 (WMF93_03795)	-	797785..798993 (-)	1209	WP_342624209.1	type II secretion system F family protein	-
WMF93_RS03800 (WMF93_03800)	-	799214..799642 (+)	429	WP_342624211.1	pilin	-
WMF93_RS03810 (WMF93_03810)	-	799989..800414 (-)	426	WP_342624212.1	hypothetical protein	-
WMF93_RS03815 (WMF93_03815)	-	800541..802415 (+)	1875	WP_342624213.1	methyl-accepting chemotaxis protein	-
WMF93_RS03820 (WMF93_03820)	-	802476..802673 (-)	198	WP_038606965.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31872.96 Da
• Isoelectric Point: 6.4707

>NTDB_id=988141 WMF93_RS03790 WP_342624207.1 796913..797782(-) (pilD) [Pseudomonas alkylphenolica strain IMGN1]
MDLMDTLASQPLFYLGFALLLGLVVGSFLNVLVHRLPIMLQRQWQAEAREVLELPSEPEPERYDLFLPASQCPHCGHRIR
AWENIPVLSYLLLRGRCSSCRGAISARYPLVELGCAALTVFVAWYLGANTAALALMLFSWGLLAMSLIDIEHRLLPDALV
LPLLWLGLIVNAFELFVPLSDALWGAVAGYLSLWLVFWLFKIITGKEGMGYGDFKLLALIGAWGGWQILPLTLLLSSILG
AVIGLIMLRAKGQQTSTPIPFGPYLAIAGWIALLWGGQITTSYLNFSGM

Nucleotide

• Length: 870 bp

>NTDB_id=988141 WMF93_RS03790 WP_342624207.1 796913..797782(-) (pilD) [Pseudomonas alkylphenolica strain IMGN1]
ATGGACCTGATGGATACGCTGGCCAGCCAGCCGCTGTTTTACTTGGGCTTTGCCCTGCTCCTGGGGCTGGTCGTCGGCAG
TTTTCTCAATGTGCTGGTGCACCGCCTGCCGATCATGCTGCAACGCCAGTGGCAGGCTGAAGCGCGGGAGGTGCTGGAGC
TGCCCAGCGAGCCTGAGCCCGAGCGTTACGATCTGTTCCTGCCCGCGTCACAGTGTCCGCACTGCGGGCACCGCATTCGC
GCCTGGGAAAACATCCCGGTTCTGAGCTACCTGCTGCTGCGCGGACGCTGCAGCAGTTGCCGCGGCGCCATCAGTGCACG
TTATCCGCTGGTGGAGCTGGGCTGCGCGGCATTGACGGTGTTTGTCGCCTGGTATCTGGGAGCGAATACCGCTGCACTGG
CCCTGATGCTGTTCAGTTGGGGGCTGCTGGCCATGAGCCTGATCGACATCGAGCACCGGCTGTTGCCCGACGCCCTGGTG
CTGCCACTGTTGTGGCTTGGGCTGATCGTCAACGCTTTCGAGCTTTTCGTGCCCTTGTCAGATGCTCTGTGGGGCGCCGT
TGCCGGTTATTTGAGCCTGTGGTTGGTGTTCTGGCTGTTCAAGATCATCACCGGCAAAGAGGGCATGGGTTACGGCGATT
TCAAGCTACTGGCGTTGATCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCCTGCTGCTGTCGTCGATACTTGGC
GCGGTGATCGGGCTGATCATGCTGCGTGCCAAAGGCCAGCAAACCAGCACGCCGATCCCCTTTGGTCCCTATCTGGCCAT
CGCGGGCTGGATCGCACTGCTCTGGGGTGGTCAAATAACCACTTCTTACCTGAATTTTTCTGGAATGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.579	98.616	0.509
pilD	Vibrio campbellii strain DS40M4	48.944	98.27	0.481
pilD	Acinetobacter baumannii D1279779	48.315	92.388	0.446
pilD	Acinetobacter nosocomialis M2	47.566	92.388	0.439
pilD	Neisseria gonorrhoeae MS11	46.84	93.08	0.436