Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   ACAK34_RS17450 Genome accession   NZ_AP031582
Coordinates   3617489..3618124 (+) Length   211 a.a.
NCBI ID   WP_000633800.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JUNP499     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3612489..3623124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK34_RS17430 (JUNP499_3493) - 3612566..3613381 (+) 816 WP_005120616.1 DsbC family protein -
  ACAK34_RS17435 (JUNP499_3494) - 3613626..3614927 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  ACAK34_RS17440 (JUNP499_3495) thrC 3614983..3616122 (+) 1140 WP_000063593.1 threonine synthase -
  ACAK34_RS17445 (JUNP499_3496) pbpG 3616230..3617276 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACAK34_RS17450 (JUNP499_3497) letA 3617489..3618124 (+) 636 WP_000633800.1 response regulator Regulator
  ACAK34_RS17455 (JUNP499_3498) pilS 3618135..3619703 (+) 1569 WP_001160343.1 PAS domain-containing sensor histidine kinase Regulator
  ACAK34_RS17460 (JUNP499_3499) - 3619728..3621149 (+) 1422 WP_000840547.1 sigma-54 dependent transcriptional regulator -
  ACAK34_RS17465 (JUNP499_3500) - 3621153..3622337 (-) 1185 WP_000939107.1 S41 family peptidase -

Sequence


Protein


Download         Length: 211 a.a.        Molecular weight: 23175.80 Da        Isoelectric Point: 5.0959

>NTDB_id=98741 ACAK34_RS17450 WP_000633800.1 3617489..3618124(+) (letA) [Acinetobacter baumannii strain JUNP499]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIRP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=98741 ACAK34_RS17450 WP_000633800.1 3617489..3618124(+) (letA) [Acinetobacter baumannii strain JUNP499]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAATATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTCGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCATTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGTGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAGGCCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.502

99.052

0.55

  letA Legionella pneumophila strain ERS1305867

55.502

99.052

0.55


Multiple sequence alignment