Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R8624_RS02345 Genome accession   NZ_AP026930
Coordinates   456605..457336 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701208     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 451605..462336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8624_RS02315 (PC1195_04440) dnaK 451622..453445 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  R8624_RS02320 (PC1195_04450) - 453458..453811 (+) 354 WP_000115730.1 hypothetical protein -
  R8624_RS02325 (PC1195_04460) dnaJ 454016..455152 (+) 1137 WP_001836079.1 molecular chaperone DnaJ -
  R8624_RS02330 - 455474..455668 (-) 195 WP_001808905.1 hypothetical protein -
  R8624_RS02335 (PC1195_04470) - 455830..456117 (-) 288 WP_000777760.1 hypothetical protein -
  R8624_RS02340 (PC1195_04480) - 456127..456537 (-) 411 WP_001112361.1 HIT family protein -
  R8624_RS02345 (PC1195_04490) pptA 456605..457336 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R8624_RS02350 (PC1195_04500) - 457333..458382 (+) 1050 WP_050311723.1 ABC transporter permease -
  R8624_RS02355 (PC1195_04510) - 458550..458879 (-) 330 WP_000132575.1 hypothetical protein -
  R8624_RS02360 (PC1195_04520) - 459155..459493 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  R8624_RS02365 (PC1195_04530) comE/blpR 459498..460235 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  R8624_RS02370 (PC1195_04540) - 460248..461588 (+) 1341 WP_000275285.1 sensor histidine kinase -
  R8624_RS02375 (PC1195_04550) blpC 461633..461788 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=98725 R8624_RS02345 WP_000889923.1 456605..457336(+) (pptA) [Streptococcus pneumoniae strain PZ900701208]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=98725 R8624_RS02345 WP_000889923.1 456605..457336(+) (pptA) [Streptococcus pneumoniae strain PZ900701208]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTTATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment