Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   R8615_RS10710 Genome accession   NZ_AP026929
Coordinates   2082458..2083216 (+) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701114     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2077458..2088216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8615_RS10680 (PC1101_20710) comE 2078055..2078807 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  R8615_RS10685 (PC1101_20720) comD/comD2 2078804..2080129 (-) 1326 WP_024477997.1 competence system sensor histidine kinase ComD Regulator
  R8615_RS10690 comC/comC2 2080150..2080275 (-) 126 WP_000799694.1 competence-stimulating peptide ComC Regulator
  R8615_RS10700 (PC1101_20730) rlmH 2080557..2081036 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R8615_RS10705 (PC1101_20740) htrA 2081219..2082400 (+) 1182 WP_000681598.1 S1C family serine protease Regulator
  R8615_RS10710 (PC1101_20750) spo0J 2082458..2083216 (+) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=98714 R8615_RS10710 WP_000410383.1 2082458..2083216(+) (spo0J) [Streptococcus pneumoniae strain PZ900701114]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=98714 R8615_RS10710 WP_000410383.1 2082458..2083216(+) (spo0J) [Streptococcus pneumoniae strain PZ900701114]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
GCTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504


Multiple sequence alignment