Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AAGT87_RS08470 Genome accession   NZ_CP152071
Coordinates   836374..837741 (-) Length   455 a.a.
NCBI ID   WP_353495481.1    Uniprot ID   -
Organism   Vibrio cholerae strain Sudan_2019_18     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 831374..842741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGT87_RS08435 (AAGT87_08435) moaE 832097..832549 (-) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -
  AAGT87_RS08440 (AAGT87_08440) moaD 832551..832796 (-) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  AAGT87_RS08445 (AAGT87_08445) moaC 832793..833272 (-) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  AAGT87_RS08450 (AAGT87_08450) moaB 833283..833795 (-) 513 WP_353495424.1 molybdenum cofactor biosynthesis protein B -
  AAGT87_RS08455 (AAGT87_08455) moaA 833855..834844 (-) 990 WP_353495425.1 GTP 3',8-cyclase MoaA -
  AAGT87_RS08460 (AAGT87_08460) - 835150..836040 (+) 891 WP_219223869.1 YvcK family protein -
  AAGT87_RS08465 (AAGT87_08465) luxU 836029..836370 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  AAGT87_RS08470 (AAGT87_08470) luxO 836374..837741 (-) 1368 WP_353495481.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AAGT87_RS08475 (AAGT87_08475) uvrB 838172..840202 (-) 2031 WP_341260498.1 excinuclease ABC subunit UvrB -
  AAGT87_RS08485 (AAGT87_08485) rsxA 841084..841665 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  AAGT87_RS08490 (AAGT87_08490) rsxB 841665..842252 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50898.10 Da        Isoelectric Point: 5.4157

>NTDB_id=987109 AAGT87_RS08470 WP_353495481.1 836374..837741(-) (luxO) [Vibrio cholerae strain Sudan_2019_18]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLNKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITD
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=987109 AAGT87_RS08470 WP_353495481.1 836374..837741(-) (luxO) [Vibrio cholerae strain Sudan_2019_18]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGAACAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACTGAC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.56

100

0.996
  pilR Pseudomonas aeruginosa PAK

38.053

99.341

0.378

Multiple sequence alignment