Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MHB48_RS19640 Genome accession   NZ_CP152052
Coordinates   3992789..3994159 (-) Length   456 a.a.
NCBI ID   WP_342599485.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL H8-0483     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3987789..3999159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB48_RS19620 (MHB48_19620) gltX 3988736..3990199 (-) 1464 WP_342599482.1 glutamate--tRNA ligase -
  MHB48_RS19625 (MHB48_19625) ispF 3990369..3990848 (-) 480 WP_342599483.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MHB48_RS19630 (MHB48_19630) ispD 3990850..3991542 (-) 693 WP_342599484.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MHB48_RS19635 (MHB48_19635) - 3991613..3992701 (-) 1089 WP_340924694.1 PIN/TRAM domain-containing protein -
  MHB48_RS19640 (MHB48_19640) radA 3992789..3994159 (-) 1371 WP_342599485.1 DNA repair protein RadA Machinery gene
  MHB48_RS19645 (MHB48_19645) - 3994219..3996666 (-) 2448 WP_342599486.1 ATP-dependent Clp protease ATP-binding subunit -
  MHB48_RS19650 (MHB48_19650) - 3996663..3997757 (-) 1095 WP_340924701.1 protein arginine kinase -
  MHB48_RS19655 (MHB48_19655) - 3997747..3998292 (-) 546 WP_340924704.1 UvrB/UvrC motif-containing protein -
  MHB48_RS19660 (MHB48_19660) - 3998316..3998783 (-) 468 WP_340924707.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49784.35 Da        Isoelectric Point: 7.1416

>NTDB_id=986989 MHB48_RS19640 WP_342599485.1 3992789..3994159(-) (radA) [Psychrobacillus sp. FSL H8-0483]
MAKKKTKFMCNSCGYEAAKWMGRCPGCGDWNTMVEETEIVSKGPKRSFQHSTGVAQKATPITAIESVDAPRVATDLVELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLANKGERVLYISGEESIRQTKLRAERLGVISSELYIYAETNLELINE
TIESVEPRFVIVDSIQTVHHPEVTSAPGSVSQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHTYRILRSQKNRFGSTNEIAIFEMVQQGLKEVLNPSELFLQERSHGSAGSAIVASMEGTRPILVEIQALVTQSSFN
YPKRMATGIDQNRVSLLMAVLEKRMGLLLQTQDAYIKVAGGVKLDEPAIDLAVLVSIVSSFRDTGVTPTDCFIGEIGLTG
EVRRVSRIEQRVQEAAKLGFKRAIVPASNMGGWDYPKGIQVVGIESVNEAMKEAFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=986989 MHB48_RS19640 WP_342599485.1 3992789..3994159(-) (radA) [Psychrobacillus sp. FSL H8-0483]
ATGGCGAAGAAGAAAACGAAATTTATGTGTAATTCATGTGGATACGAGGCAGCTAAATGGATGGGAAGATGTCCAGGGTG
CGGTGATTGGAATACGATGGTAGAAGAGACGGAGATCGTGTCAAAAGGACCAAAACGATCATTTCAGCATTCTACAGGAG
TAGCACAGAAGGCAACGCCAATAACGGCGATTGAATCAGTAGATGCGCCGCGAGTAGCAACAGATCTTGTTGAGTTAAAT
CGTGTACTCGGTGGAGGAATTGTACCGGGGTCACTTGTTCTAATAGGTGGAGATCCGGGTATAGGAAAGTCGACTTTACT
ATTACAGGTTTCGGCGTTACTTGCAAACAAAGGTGAACGTGTTTTATACATTTCCGGTGAAGAATCGATTAGACAAACGA
AGCTTCGTGCGGAGCGCTTAGGTGTTATTTCGTCTGAGCTTTATATTTATGCAGAAACAAATCTTGAATTAATTAATGAG
ACAATTGAGAGTGTGGAGCCGCGATTTGTCATTGTTGACTCAATCCAAACAGTACATCACCCAGAAGTGACGAGTGCACC
AGGAAGTGTCTCTCAAGTTCGTGAAAGTACAGCTGAACTAATGCGTATTGCTAAAACGAAGAACATTGCAATCTTTTTAG
TGGGACACGTAACTAAAGAGGGGCAAATTGCTGGGCCTCGTATATTAGAGCATATGGTTGATACTGTTCTATATTTTGAA
GGGGAGCGACACCATACTTATAGAATTTTACGTTCACAAAAAAATAGATTTGGGTCTACAAATGAAATTGCTATATTTGA
AATGGTTCAGCAAGGACTAAAGGAAGTATTAAATCCTTCTGAATTATTTTTGCAGGAACGGTCACATGGATCTGCAGGTT
CGGCTATTGTTGCTTCTATGGAGGGGACTAGGCCAATTTTAGTGGAAATCCAAGCACTCGTGACACAATCTAGTTTTAAT
TATCCTAAACGGATGGCTACCGGAATCGATCAAAATCGCGTATCTTTACTGATGGCAGTGTTGGAAAAACGTATGGGATT
ATTACTTCAAACGCAAGATGCTTATATAAAAGTTGCTGGTGGAGTCAAACTAGATGAACCTGCAATCGATTTAGCCGTCC
TAGTAAGTATCGTTTCTAGTTTTCGAGATACAGGAGTAACGCCTACAGATTGTTTTATTGGAGAAATAGGGTTAACGGGA
GAAGTGAGAAGAGTATCCAGAATCGAACAACGTGTACAAGAAGCAGCGAAATTAGGGTTTAAAAGAGCAATTGTTCCAGC
TTCAAATATGGGCGGCTGGGATTATCCAAAAGGAATTCAAGTCGTGGGCATAGAATCAGTAAATGAAGCAATGAAAGAGG
CTTTTTCCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.742

100

0.711
  radA Streptococcus pneumoniae Rx1

62.281

100

0.623
  radA Streptococcus pneumoniae D39

62.281

100

0.623
  radA Streptococcus pneumoniae R6

62.281

100

0.623
  radA Streptococcus pneumoniae TIGR4

62.281

100

0.623
  radA Streptococcus mitis NCTC 12261

62.281

100

0.623
  radA Streptococcus mitis SK321

62.061

100

0.621

Multiple sequence alignment