Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   ACOCJJ_RS07010 Genome accession   NZ_CP184561
Coordinates   1490961..1492340 (-) Length   459 a.a.
NCBI ID   WP_420228540.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBTW2018311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1485961..1497340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCJJ_RS06980 (ACOCJJ_06980) - 1485999..1486115 (-) 117 WP_001807839.1 hypothetical protein -
  ACOCJJ_RS06985 (ACOCJJ_06985) cmk 1486146..1486805 (-) 660 WP_000644390.1 (d)CMP kinase -
  ACOCJJ_RS06990 (ACOCJJ_06990) - 1486882..1487850 (+) 969 WP_000681742.1 asparaginase -
  ACOCJJ_RS06995 (ACOCJJ_06995) ypdA 1487965..1488951 (-) 987 WP_001174257.1 bacillithiol disulfide reductase YpdA -
  ACOCJJ_RS07000 (ACOCJJ_07000) - 1489112..1489228 (-) 117 WP_001807838.1 hypothetical protein -
  ACOCJJ_RS07005 (ACOCJJ_07005) ebpS 1489354..1490808 (-) 1455 WP_000069278.1 elastin-binding protein EbpS -
  ACOCJJ_RS07010 (ACOCJJ_07010) recS 1490961..1492340 (-) 1380 WP_420228540.1 RecQ family ATP-dependent DNA helicase Machinery gene
  ACOCJJ_RS07015 (ACOCJJ_07015) - 1492330..1493283 (-) 954 WP_001163801.1 helix-turn-helix domain-containing protein -
  ACOCJJ_RS07020 (ACOCJJ_07020) - 1493391..1493639 (+) 249 WP_001151997.1 ferredoxin -
  ACOCJJ_RS07025 (ACOCJJ_07025) - 1493745..1494290 (-) 546 WP_001186909.1 ECF transporter S component -
  ACOCJJ_RS07030 (ACOCJJ_07030) - 1494569..1494658 (-) 90 Protein_1377 hypothetical protein -
  ACOCJJ_RS07035 (ACOCJJ_07035) - 1494694..1495626 (-) 933 WP_001825312.1 DUF1672 domain-containing protein -
  ACOCJJ_RS07040 (ACOCJJ_07040) - 1495704..1496069 (-) 366 Protein_1379 hypothetical protein -
  ACOCJJ_RS07045 (ACOCJJ_07045) - 1496081..1496977 (-) 897 WP_001807840.1 DUF1672 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52868.25 Da        Isoelectric Point: 7.0468

>NTDB_id=986768 ACOCJJ_RS07010 WP_420228540.1 1490961..1492340(-) (recS) [Staphylococcus aureus strain CBTW2018311]
MLHDILRNKFGFENFKPGQQEIIESIMSQQHTLGILPTGSGKSLCYQIPTYLSGKPTLIISPLISLMDDQVMQLKINGEK
RVTCIHSGMDEIEKKHNIKCLRHSRFIFLSPEFLLQPSNFKLISMIDFGMIVLDEAHCLSEWGYDFRPHYALIGKVTKHF
KEAVVLALTATAPPHLQDDLTEMLAIQFNVIKTTMNRPNISFKHLNFHDDEDKIEWLLPFLQQSGPTIIYVSSKKMCLNL
AQLIYDSGFLTGIYHGDMNYQERHTVQQQFLNNDIPIIVATSAFGMGINKKDIRTIIHFHLSTSPSNYIQEIGRAGRNGE
LSQAISLFQPDDKYILETLLFADMITEEDVQNFEIGEFLAPDKQDVLTMLHSFYSIGALKQIFKQSFKRKQLGFFRMIGY
CKLDQCRRKYLLEFFGEYPPAQDRCCDNDSNITDIVILNKKKVIRSIGFDEKLQNLFLR

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=986768 ACOCJJ_RS07010 WP_420228540.1 1490961..1492340(-) (recS) [Staphylococcus aureus strain CBTW2018311]
ATGTTGCATGATATTTTACGAAACAAATTTGGCTTCGAGAATTTTAAACCGGGACAACAGGAAATTATAGAAAGTATAAT
GTCTCAACAGCACACTCTAGGTATTCTTCCAACTGGAAGTGGAAAGAGTTTGTGTTATCAAATACCTACGTATTTATCAG
GTAAGCCGACATTAATTATCTCACCGTTAATATCTTTAATGGATGACCAAGTTATGCAGTTGAAAATAAATGGAGAAAAA
CGTGTAACATGTATTCACTCTGGTATGGATGAAATTGAGAAAAAGCATAATATTAAATGTTTACGACATAGCCGTTTCAT
CTTTCTAAGTCCAGAATTTCTCCTGCAACCGTCAAATTTTAAATTAATATCTATGATAGACTTTGGCATGATTGTTCTAG
ATGAAGCACATTGCCTATCTGAATGGGGATATGATTTCAGACCACATTATGCTCTAATAGGAAAAGTAACAAAGCATTTT
AAAGAAGCGGTTGTCTTAGCATTGACAGCAACTGCACCACCGCATTTACAAGATGATTTGACGGAAATGTTAGCGATTCA
ATTCAATGTTATTAAAACTACAATGAATCGCCCAAACATAAGCTTTAAGCATCTTAATTTTCATGATGATGAAGATAAAA
TTGAATGGTTGCTGCCGTTTCTACAACAGTCGGGACCAACGATTATTTATGTCTCATCGAAAAAGATGTGTCTGAATTTA
GCGCAACTTATTTATGATTCAGGTTTTCTTACAGGTATTTATCATGGTGATATGAATTATCAAGAGCGACACACAGTTCA
ACAACAATTTTTAAATAATGATATTCCGATTATAGTCGCAACGAGTGCTTTTGGTATGGGAATTAATAAAAAAGATATTC
GCACAATCATTCACTTTCATCTTTCAACAAGTCCTTCTAACTACATTCAAGAAATTGGCCGTGCGGGTCGCAATGGTGAA
CTAAGTCAGGCAATTAGTTTATTTCAACCGGACGATAAATATATTTTAGAAACGTTATTATTTGCAGATATGATAACAGA
AGAAGATGTACAAAATTTCGAAATAGGAGAATTTTTAGCACCCGATAAACAAGACGTTTTGACAATGTTGCATTCATTCT
ATAGTATCGGCGCCTTGAAACAGATATTTAAGCAATCATTTAAACGAAAGCAATTAGGATTCTTTCGCATGATTGGCTAT
TGCAAATTAGATCAATGTAGACGGAAGTATTTATTAGAATTTTTCGGTGAATATCCACCGGCACAAGATCGATGTTGTGA
CAATGATTCTAATATAACTGATATCGTAATTTTAAATAAGAAGAAGGTAATTAGAAGTATTGGATTTGATGAAAAGTTGC
AAAATTTATTTCTCAGATAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(17-175)

RecQ zinc-binding (RecQ_Zn_bind)

(389-428)

Helicase conserved C-terminal domain (Helicase_C)

(212-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

36.645

98.693

0.362

Multiple sequence alignment