Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHB51_RS11890 Genome accession   NZ_CP152046
Coordinates   2550512..2551066 (+) Length   184 a.a.
NCBI ID   WP_066168546.1    Uniprot ID   -
Organism   Metasolibacillus sp. FSL K6-0083     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2545512..2556066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB51_RS11850 (MHB51_11850) - 2545820..2546020 (+) 201 WP_066168531.1 DUF951 domain-containing protein -
  MHB51_RS11855 (MHB51_11855) ychF 2546112..2547212 (+) 1101 WP_107943566.1 redox-regulated ATPase YchF -
  MHB51_RS11860 (MHB51_11860) - 2547626..2547850 (-) 225 WP_107943565.1 hypothetical protein -
  MHB51_RS11865 (MHB51_11865) - 2547864..2548403 (-) 540 WP_342558214.1 DUF3267 domain-containing protein -
  MHB51_RS11870 (MHB51_11870) - 2548437..2548919 (-) 483 WP_342558215.1 hypothetical protein -
  MHB51_RS11875 (MHB51_11875) - 2549021..2549248 (+) 228 WP_342471541.1 hypothetical protein -
  MHB51_RS11880 (MHB51_11880) - 2549381..2549545 (+) 165 WP_342558216.1 hypothetical protein -
  MHB51_RS11885 (MHB51_11885) rpsF 2550184..2550474 (+) 291 WP_066168544.1 30S ribosomal protein S6 -
  MHB51_RS11890 (MHB51_11890) ssbA 2550512..2551066 (+) 555 WP_066168546.1 single-stranded DNA-binding protein Machinery gene
  MHB51_RS11895 (MHB51_11895) rpsR 2551112..2551351 (+) 240 WP_066168550.1 30S ribosomal protein S18 -
  MHB51_RS11900 (MHB51_11900) - 2551560..2553506 (-) 1947 WP_342558217.1 DNA-binding protein -
  MHB51_RS11905 (MHB51_11905) phnE 2553566..2554372 (-) 807 WP_342558218.1 phosphonate ABC transporter, permease protein PhnE -
  MHB51_RS11910 (MHB51_11910) phnE 2554385..2555170 (-) 786 WP_107943582.1 phosphonate ABC transporter, permease protein PhnE -
  MHB51_RS11915 (MHB51_11915) phnC 2555191..2555952 (-) 762 WP_107943560.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20381.38 Da        Isoelectric Point: 4.7719

>NTDB_id=986721 MHB51_RS11890 WP_066168546.1 2550512..2551066(+) (ssbA) [Metasolibacillus sp. FSL K6-0083]
MINRVVLVGRLTKDPELRYTPSGVPMARFTVAVNRTFSNQQGEREADFIGCIAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADAVQFLEPRSGGASQGMQNQPYGGNNYGGGQQNYNNQQYGGAPAQDPFGSYQQQQPPQNQQNY
TRMDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=986721 MHB51_RS11890 WP_066168546.1 2550512..2551066(+) (ssbA) [Metasolibacillus sp. FSL K6-0083]
ATGATTAACCGTGTCGTACTAGTAGGCAGACTGACAAAAGATCCAGAGCTTCGTTATACGCCAAGTGGAGTTCCTATGGC
TCGCTTTACAGTCGCTGTAAACCGAACATTTTCGAACCAACAAGGTGAGCGTGAAGCTGACTTCATTGGCTGTATTGCGT
GGCGTAAACAAGCCGAAAATTTAGCAAACTTTATGCGTAAAGGGAGCTTAATTGGCGTTGAAGGTCGCATTCAAACAGGT
AGCTATGAAGGACAAGACGGAAAACGTGTTTATACAACAGATGTTGTAGCAGATGCAGTACAGTTCTTAGAACCACGTAG
CGGTGGCGCATCACAAGGTATGCAAAATCAGCCATATGGCGGTAACAATTATGGTGGAGGGCAACAAAACTATAATAACC
AGCAATATGGCGGTGCTCCTGCACAAGATCCATTTGGTTCTTATCAACAGCAGCAGCCACCACAAAATCAGCAAAATTAT
ACACGTATGGATGAGGACCCATTTGCAAATAGCAAAGGGCCAATCGAAGTTTCAGAGGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.522

100

0.565
  ssb Latilactobacillus sakei subsp. sakei 23K

50.538

100

0.511

Multiple sequence alignment