Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MHB41_RS05105 Genome accession   NZ_CP152045
Coordinates   1017444..1018022 (+) Length   192 a.a.
NCBI ID   WP_041117040.1    Uniprot ID   -
Organism   Bacillus sp. FSL H7-0578     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1012444..1023022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB41_RS05085 (MHB41_05085) - 1012938..1014233 (-) 1296 WP_024426546.1 globin-coupled sensor protein -
  MHB41_RS05090 (MHB41_05090) - 1014327..1015859 (-) 1533 WP_041117038.1 FAD-dependent oxidoreductase -
  MHB41_RS05095 (MHB41_05095) - 1016001..1016861 (+) 861 WP_034282185.1 SDR family oxidoreductase -
  MHB41_RS05100 (MHB41_05100) - 1016918..1017154 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  MHB41_RS05105 (MHB41_05105) comK 1017444..1018022 (+) 579 WP_041117040.1 competence protein ComK Regulator
  MHB41_RS05110 (MHB41_05110) - 1018321..1018803 (+) 483 WP_070325675.1 hypothetical protein -
  MHB41_RS05115 (MHB41_05115) - 1019086..1019361 (+) 276 WP_340900249.1 barstar family protein -
  MHB41_RS05120 (MHB41_05120) ceuB 1019522..1020472 (+) 951 WP_041117046.1 ABC transporter permease Machinery gene
  MHB41_RS05125 (MHB41_05125) - 1020465..1021415 (+) 951 WP_340899050.1 iron chelate uptake ABC transporter family permease subunit -
  MHB41_RS05130 (MHB41_05130) - 1021406..1022164 (+) 759 WP_041110022.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22292.33 Da        Isoelectric Point: 8.7962

>NTDB_id=986648 MHB41_RS05105 WP_041117040.1 1017444..1018022(+) (comK) [Bacillus sp. FSL H7-0578]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQAVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNKY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=986648 MHB41_RS05105 WP_041117040.1 1017444..1018022(+) (comK) [Bacillus sp. FSL H7-0578]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTTATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAACCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTTTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAACGAGCAAGCCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTCGATGGA
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAAGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGAAACAAATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.609

Multiple sequence alignment