Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MHI16_RS16410 Genome accession   NZ_CP152044
Coordinates   3184668..3186047 (-) Length   459 a.a.
NCBI ID   WP_342498014.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0923     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3179668..3191047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI16_RS16375 (MHI16_16375) flgL 3179848..3180759 (-) 912 WP_061409756.1 flagellar hook-associated protein FlgL -
  MHI16_RS16380 (MHI16_16380) flgK 3180769..3182289 (-) 1521 WP_061409758.1 flagellar hook-associated protein FlgK -
  MHI16_RS16385 (MHI16_16385) - 3182305..3182787 (-) 483 WP_034660146.1 flagellar protein FlgN -
  MHI16_RS16390 (MHI16_16390) flgM 3182806..3183069 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI16_RS16395 (MHI16_16395) - 3183149..3183568 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  MHI16_RS16400 (MHI16_16400) comFC 3183625..3184311 (-) 687 WP_208856849.1 ComF family protein Machinery gene
  MHI16_RS16405 (MHI16_16405) - 3184308..3184601 (-) 294 WP_061409760.1 competence protein ComFB -
  MHI16_RS16410 (MHI16_16410) comFA 3184668..3186047 (-) 1380 WP_342498014.1 DEAD/DEAH box helicase Machinery gene
  MHI16_RS16415 (MHI16_16415) - 3186167..3187009 (-) 843 WP_058013557.1 DegV family protein -
  MHI16_RS16420 (MHI16_16420) degU 3187227..3187916 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHI16_RS16425 (MHI16_16425) degS 3187981..3189156 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  MHI16_RS16430 (MHI16_16430) - 3189378..3190046 (+) 669 WP_058013556.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52529.42 Da        Isoelectric Point: 10.1184

>NTDB_id=986629 MHI16_RS16410 WP_342498014.1 3184668..3186047(-) (comFA) [Bacillus sp. FSL K6-0923]
MNMDKAMELGQHLQSRHLLTAETRCSQSDLDWLEEKGLVMRTPAIERKANGLICCRCGVSKNRYFAHSPCDKCQKDCVYC
RSCIMMGKTKECGFLYEWTGPQMEETCHTELTWQGNLSKGQKRASEKLIKAIKSKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGLNIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMIKDVFRGQLEAIKIPLRFHQQPLPVPSFHWVGNWKKKLKKNQLPSKVMNWMQN
HITKKRRTLFFVPSISTMKKVTKVLRKHHLNVEGVSAEDPDRKQKVQQFRDDKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFYFGLTRNMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=986629 MHI16_RS16410 WP_342498014.1 3184668..3186047(-) (comFA) [Bacillus sp. FSL K6-0923]
TTGAACATGGACAAAGCAATGGAACTAGGGCAGCACTTGCAGTCACGCCACCTGCTTACTGCTGAAACAAGATGCTCACA
GTCTGATTTGGATTGGTTGGAGGAGAAAGGGTTAGTTATGCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTAATTT
GCTGCAGATGTGGTGTATCAAAAAATCGGTACTTTGCCCACTCTCCGTGTGACAAGTGTCAAAAAGATTGTGTGTATTGT
AGATCATGCATCATGATGGGGAAAACAAAGGAATGTGGCTTTCTTTATGAATGGACGGGTCCGCAAATGGAAGAAACATG
TCACACGGAATTAACATGGCAGGGAAACCTGTCTAAAGGACAAAAAAGAGCATCAGAAAAATTGATCAAAGCGATAAAAA
GCAAATCTGATTTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACTGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAGAAAGCATT
TCAAGGACTGAACATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGCTAGTCATCGCTACAACTC
ACCAGTTGATGAGATATAAACATGCATTTGATGTGCTCATTATTGATGAAGTGGACGCCTTTCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GATAAAAGATGTATTTCGTGGACAACTAGAAGCCATTAAAATTCCTCTGCGCTTTCACCAACAACCTTTACCCGTCCCAT
CCTTTCATTGGGTTGGAAATTGGAAGAAGAAATTAAAGAAGAATCAGCTCCCATCTAAAGTAATGAATTGGATGCAGAAT
CATATTACAAAAAAGAGAAGGACTTTATTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACAAAGGTTCTTAGAAA
GCACCACTTAAATGTAGAAGGGGTGTCTGCTGAAGATCCAGACAGGAAACAAAAGGTCCAGCAATTCAGAGATGATAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGCGTAACGATTCCAAATGTACAAGTGGGGGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCTGATTTTTTTAAAGGAGATGT
TTTCTTTTTTTATTTTGGTTTAACGAGAAATATGAAACAAGCAAAAAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCTGAAAAATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(322-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.187

99.129

0.527

Multiple sequence alignment