Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MHB69_RS11070 Genome accession   NZ_CP152043
Coordinates   2162469..2164202 (-) Length   577 a.a.
NCBI ID   WP_342495560.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0994     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2157469..2169202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB69_RS11055 (MHB69_11055) - 2158346..2159446 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  MHB69_RS11060 (MHB69_11060) spo0A 2159903..2160706 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  MHB69_RS11065 (MHB69_11065) spoIVB 2160991..2162268 (-) 1278 WP_342495559.1 SpoIVB peptidase -
  MHB69_RS11070 (MHB69_11070) recN 2162469..2164202 (-) 1734 WP_342495560.1 DNA repair protein RecN Machinery gene
  MHB69_RS11075 (MHB69_11075) argR 2164236..2164685 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  MHB69_RS11080 (MHB69_11080) - 2164849..2165703 (-) 855 WP_034280266.1 TlyA family RNA methyltransferase -
  MHB69_RS11085 (MHB69_11085) dxs 2165700..2167601 (-) 1902 WP_034280265.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MHB69_RS11090 (MHB69_11090) - 2167752..2168642 (-) 891 WP_061109341.1 polyprenyl synthetase family protein -
  MHB69_RS11095 (MHB69_11095) - 2168632..2168892 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64701.54 Da        Isoelectric Point: 4.7728

>NTDB_id=986549 MHB69_RS11070 WP_342495560.1 2162469..2164202(-) (recN) [Bacillus sp. FSL K6-0994]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEDIAPALM
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYILEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=986549 MHB69_RS11070 WP_342495560.1 2162469..2164202(-) (recN) [Bacillus sp. FSL K6-0994]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTTCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGGTCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCACCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAATAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGGGAAGTAGGCCGGCTTTTGCTTGATATACATGGACAGCACGATA
ATCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGACATTGCACCGGCTCTCATG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCCCAAAAGCTAAGGCAGCTGTCTGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTCCAAAACGCGTATAACGCTCTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGTATGTCCTCAAGTGAGCTTGAGCAGGTGTCTGAGATCAACGATGATTTGAAAAAGCT
ATCTGAACAAGTGTCGAACTCCTACTACATATTAGAGGATTCAACCTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGCTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAATTAGATGCGATGAGCCGTGACGCCCTGCTCGAAGCACTTAATGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCGAAGCAAATCCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTGCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGC
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGTATTACACA
TCTGCCTCAAGTAGCCGCAATGGCTGACACACATCTCTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCATGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.563

100

0.756

Multiple sequence alignment