Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MHI46_RS11180 Genome accession   NZ_CP152042
Coordinates   2185466..2187199 (-) Length   577 a.a.
NCBI ID   WP_064497585.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1000     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2180466..2192199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI46_RS11165 (MHI46_11165) - 2181344..2182444 (-) 1101 WP_064497584.1 Rap family tetratricopeptide repeat protein -
  MHI46_RS11170 (MHI46_11170) spo0A 2182901..2183704 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  MHI46_RS11175 (MHI46_11175) spoIVB 2183990..2185267 (-) 1278 WP_039179850.1 SpoIVB peptidase -
  MHI46_RS11180 (MHI46_11180) recN 2185466..2187199 (-) 1734 WP_064497585.1 DNA repair protein RecN Machinery gene
  MHI46_RS11185 (MHI46_11185) argR 2187233..2187682 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  MHI46_RS11190 (MHI46_11190) - 2188052..2188906 (-) 855 WP_064497586.1 TlyA family RNA methyltransferase -
  MHI46_RS11195 (MHI46_11195) dxs 2188903..2190804 (-) 1902 WP_064497587.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MHI46_RS11200 (MHI46_11200) - 2190955..2191845 (-) 891 WP_064497588.1 polyprenyl synthetase family protein -
  MHI46_RS11205 (MHI46_11205) - 2191835..2192095 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64767.58 Da        Isoelectric Point: 4.7748

>NTDB_id=986489 MHI46_RS11180 WP_064497585.1 2185466..2187199(-) (recN) [Bacillus sp. FSL K6-1000]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNRLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=986489 MHI46_RS11180 WP_064497585.1 2185466..2187199(-) (recN) [Bacillus sp. FSL K6-1000]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACAGGGGAAACAGGTGCCGGAAAATCCATCATGATTGATGCTGTCTCACTTCTCGTGGGAGGAAGAGGGTCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAAGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGTGAAGTAGGACGGCTTTTGCTTGATATACATGGTCAGCACGATA
ACCAGCTGCTTATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCAGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTCAGGCAGCTGTCCGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCAGCGCAGTTAGAGCCGGGAGAAGATGAGCGGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTTCAAAACGCGTATAACGCTTTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGCATGTCCTCAAGCGAGCTTGAGCAAGTGTCTGAGATCAATGATGATTTGAAAAAGCT
ATCTGAACAAGTATCGAATTCCTACTACTTATTAGAGGATTCAACTTTCCAAATGCGAAGCATGCTGGATCAGTTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACAGCCATCTGCAGACGCT
CAAGAATAGACTGGATGCGATGAGCCGTGATGCCCTGCTGGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCGAAGCAAATCCAAACGGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTATT
CGATATGCGCCTTTTGGCAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCCAAACAAGACGTCACATCCATTATCTTCGATGAAGTTGATACAGGC
GTCAGCGGCAGAGTCGCACAAGCCATTGCAGAAAAAATTTACAAAGTAGCGTCTGGATCACAAGTGCTCTGCATTACACA
TCTGCCTCAAGTAGCCGCAATGGCTGACACACATCTCTTTATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACAAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTCACAGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757

Multiple sequence alignment