Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHH31_RS16380 Genome accession   NZ_CP152041
Coordinates   3180513..3181202 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL K6-1033     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3175513..3186202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH31_RS16345 (MHH31_16345) - 3175599..3176081 (-) 483 WP_007499977.1 flagellar protein FlgN -
  MHH31_RS16350 (MHH31_16350) flgM 3176100..3176363 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHH31_RS16355 (MHH31_16355) - 3176443..3176862 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  MHH31_RS16360 (MHH31_16360) comFC 3176919..3177605 (-) 687 WP_172793290.1 ComF family protein Machinery gene
  MHH31_RS16365 (MHH31_16365) - 3177602..3177895 (-) 294 WP_008348267.1 competence protein ComFB -
  MHH31_RS16370 (MHH31_16370) comFA 3177960..3179087 (-) 1128 WP_082136017.1 DEAD/DEAH box helicase Machinery gene
  MHH31_RS16375 (MHH31_16375) - 3179459..3180301 (-) 843 WP_024719242.1 DegV family protein -
  MHH31_RS16380 (MHH31_16380) degU 3180513..3181202 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHH31_RS16385 (MHH31_16385) degS 3181267..3182442 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  MHH31_RS16390 (MHH31_16390) - 3182664..3183332 (+) 669 WP_017357860.1 YigZ family protein -
  MHH31_RS16395 (MHH31_16395) - 3183317..3184414 (+) 1098 WP_024719244.1 LCP family protein -
  MHH31_RS16400 (MHH31_16400) - 3184453..3185520 (-) 1068 WP_024719245.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=986450 MHH31_RS16380 WP_008348273.1 3180513..3181202(-) (degU) [Bacillus sp. FSL K6-1033]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=986450 MHH31_RS16380 WP_008348273.1 3180513..3181202(-) (degU) [Bacillus sp. FSL K6-1033]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment