Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NYE62_RS19100 Genome accession   NZ_CP152037
Coordinates   3848353..3848472 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2861     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3843353..3853472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE62_RS19080 (NYE62_19080) - 3843703..3844215 (+) 513 Protein_3701 bacteriocin biosynthesis protein AlbG -
  NYE62_RS19085 (NYE62_19085) - 3844222..3845598 (-) 1377 WP_342497127.1 YncE family protein -
  NYE62_RS19090 (NYE62_19090) - 3845638..3846993 (-) 1356 WP_144463839.1 YncE family protein -
  NYE62_RS19095 (NYE62_19095) rapF 3847224..3848369 (+) 1146 WP_033574379.1 tetratricopeptide repeat protein Regulator
  NYE62_RS19100 (NYE62_19100) phrF 3848353..3848472 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NYE62_RS19105 (NYE62_19105) - 3848670..3848873 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  NYE62_RS19110 (NYE62_19110) - 3848887..3849090 (+) 204 WP_007407641.1 hypothetical protein -
  NYE62_RS19115 (NYE62_19115) - 3849125..3849310 (+) 186 WP_342497128.1 DUF4177 domain-containing protein -
  NYE62_RS19120 (NYE62_19120) - 3849496..3849777 (+) 282 WP_007407643.1 hypothetical protein -
  NYE62_RS19125 (NYE62_19125) - 3849821..3850333 (+) 513 WP_031378560.1 stage II sporulation protein M -
  NYE62_RS19130 (NYE62_19130) - 3850924..3851142 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  NYE62_RS19135 (NYE62_19135) speB 3851310..3852182 (-) 873 WP_007407646.1 agmatinase -
  NYE62_RS19140 (NYE62_19140) speE 3852241..3853071 (-) 831 WP_144664824.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=986246 NYE62_RS19100 WP_015240778.1 3848353..3848472(+) (phrF) [Bacillus sp. FSL K6-2861]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=986246 NYE62_RS19100 WP_015240778.1 3848353..3848472(+) (phrF) [Bacillus sp. FSL K6-2861]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment