Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NYE62_RS15900 Genome accession   NZ_CP152037
Coordinates   3202898..3203542 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus sp. FSL K6-2861     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3197898..3208542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE62_RS15865 (NYE62_15865) - 3199083..3199514 (+) 432 WP_342497050.1 Na(+)/H(+) antiporter subunit B -
  NYE62_RS15870 (NYE62_15870) - 3199514..3199855 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  NYE62_RS15875 (NYE62_15875) - 3199848..3201329 (+) 1482 WP_342497051.1 Na+/H+ antiporter subunit D -
  NYE62_RS15880 (NYE62_15880) - 3201335..3201811 (+) 477 WP_327954468.1 Na+/H+ antiporter subunit E -
  NYE62_RS15885 (NYE62_15885) - 3201811..3202095 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  NYE62_RS15890 (NYE62_15890) mnhG 3202079..3202453 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  NYE62_RS15895 (NYE62_15895) - 3202493..3202876 (-) 384 WP_007408674.1 hotdog fold thioesterase -
  NYE62_RS15900 (NYE62_15900) comA 3202898..3203542 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  NYE62_RS15905 (NYE62_15905) comP 3203623..3205929 (-) 2307 WP_342497052.1 histidine kinase Regulator
  NYE62_RS15910 (NYE62_15910) comX 3205952..3206128 (-) 177 WP_013353396.1 competence pheromone ComX -
  NYE62_RS15915 (NYE62_15915) - 3206147..3207022 (-) 876 WP_144664417.1 polyprenyl synthetase family protein -
  NYE62_RS15920 (NYE62_15920) degQ 3207174..3207314 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  NYE62_RS15925 (NYE62_15925) - 3207780..3208121 (+) 342 WP_144463936.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=986233 NYE62_RS15900 WP_003152052.1 3202898..3203542(-) (comA) [Bacillus sp. FSL K6-2861]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=986233 NYE62_RS15900 WP_003152052.1 3202898..3203542(-) (comA) [Bacillus sp. FSL K6-2861]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCTAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCACGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment