Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYE42_RS01810 Genome accession   NZ_CP152036
Coordinates   370265..370702 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2865     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 365265..375702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE42_RS01785 (NYE42_01785) - 366284..367420 (+) 1137 WP_352426721.1 zinc-dependent alcohol dehydrogenase -
  NYE42_RS01790 (NYE42_01790) - 367435..367869 (+) 435 WP_352426722.1 RDD family protein -
  NYE42_RS01795 (NYE42_01795) - 367942..368265 (+) 324 WP_040221546.1 YckD family protein -
  NYE42_RS01800 (NYE42_01800) - 368369..369805 (+) 1437 WP_352426723.1 family 1 glycosylhydrolase -
  NYE42_RS01805 (NYE42_01805) nin/comJ 369846..370244 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  NYE42_RS01810 (NYE42_01810) nucA/comI 370265..370702 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYE42_RS01815 (NYE42_01815) hxlB 371059..371616 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  NYE42_RS01820 (NYE42_01820) hxlA 371613..372248 (-) 636 WP_031378686.1 3-hexulose-6-phosphate synthase -
  NYE42_RS01825 (NYE42_01825) - 372481..372843 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=986104 NYE42_RS01810 WP_003156588.1 370265..370702(-) (nucA/comI) [Bacillus sp. FSL K6-2865]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=986104 NYE42_RS01810 WP_003156588.1 370265..370702(-) (nucA/comI) [Bacillus sp. FSL K6-2865]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment