Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MHI58_RS12020 Genome accession   NZ_CP152035
Coordinates   2333930..2334265 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2869     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2328930..2339265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI58_RS12000 (MHI58_12000) gcvT 2329408..2330505 (-) 1098 WP_045034368.1 glycine cleavage system aminomethyltransferase GcvT -
  MHI58_RS12005 (MHI58_12005) - 2331065..2332735 (+) 1671 WP_008342199.1 DEAD/DEAH box helicase -
  MHI58_RS12010 (MHI58_12010) - 2332750..2333547 (+) 798 WP_017367588.1 YqhG family protein -
  MHI58_RS12015 (MHI58_12015) - 2333732..2333896 (+) 165 WP_082055572.1 anti-repressor SinI family protein -
  MHI58_RS12020 (MHI58_12020) sinR 2333930..2334265 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  MHI58_RS12025 (MHI58_12025) tasA 2334333..2335133 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  MHI58_RS12030 (MHI58_12030) sipW 2335192..2335764 (-) 573 WP_017357979.1 signal peptidase I SipW -
  MHI58_RS12035 (MHI58_12035) tapA 2335814..2336341 (-) 528 WP_045034369.1 amyloid fiber anchoring/assembly protein TapA -
  MHI58_RS12040 (MHI58_12040) - 2336594..2336920 (+) 327 WP_045034370.1 DUF3889 domain-containing protein -
  MHI58_RS12045 (MHI58_12045) - 2336955..2337149 (-) 195 WP_008342191.1 YqzE family protein -
  MHI58_RS12050 (MHI58_12050) comGG 2337210..2337593 (-) 384 WP_045034371.1 competence type IV pilus minor pilin ComGG -
  MHI58_RS12055 (MHI58_12055) comGF 2337590..2338087 (-) 498 WP_045034372.1 competence type IV pilus minor pilin ComGF -
  MHI58_RS12060 (MHI58_12060) comGE 2338029..2338343 (-) 315 WP_041506956.1 competence type IV pilus minor pilin ComGE -
  MHI58_RS12065 (MHI58_12065) comGD 2338327..2338773 (-) 447 WP_045034373.1 competence type IV pilus minor pilin ComGD -
  MHI58_RS12070 (MHI58_12070) comGC 2338766..2339059 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=986070 MHI58_RS12020 WP_017357978.1 2333930..2334265(+) (sinR) [Bacillus sp. FSL K6-2869]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=986070 MHI58_RS12020 WP_017357978.1 2333930..2334265(+) (sinR) [Bacillus sp. FSL K6-2869]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment