Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MHB83_RS00565 Genome accession   NZ_CP152034
Coordinates   96376..97017 (-) Length   213 a.a.
NCBI ID   WP_003213500.1    Uniprot ID   A0AB34QVB6
Organism   Bacillus sp. FSL K6-3149     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 91376..102017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB83_RS00530 (MHB83_00530) - 92508..92939 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  MHB83_RS00535 (MHB83_00535) - 92939..93280 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  MHB83_RS00540 (MHB83_00540) - 93273..94751 (+) 1479 WP_034620106.1 Na+/H+ antiporter subunit D -
  MHB83_RS00545 (MHB83_00545) - 94758..95237 (+) 480 WP_044140819.1 Na+/H+ antiporter subunit E -
  MHB83_RS00550 (MHB83_00550) - 95237..95518 (+) 282 WP_003213177.1 Na(+)/H(+) antiporter subunit F1 -
  MHB83_RS00555 (MHB83_00555) mnhG 95502..95876 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  MHB83_RS00560 (MHB83_00560) - 95963..96352 (-) 390 WP_340866485.1 hotdog fold thioesterase -
  MHB83_RS00565 (MHB83_00565) comA 96376..97017 (-) 642 WP_003213500.1 response regulator transcription factor Regulator
  MHB83_RS00570 (MHB83_00570) comP 97098..99383 (-) 2286 WP_253622277.1 ATP-binding protein Regulator
  MHB83_RS00575 (MHB83_00575) comX 99390..99578 (-) 189 WP_342496544.1 competence pheromone ComX -
  MHB83_RS00580 (MHB83_00580) - 99547..100470 (-) 924 WP_322000331.1 polyprenyl synthetase family protein -
  MHB83_RS00585 (MHB83_00585) degQ 100622..100762 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  MHB83_RS00590 (MHB83_00590) - 101268..101621 (+) 354 WP_050944043.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24155.54 Da        Isoelectric Point: 4.5204

>NTDB_id=985976 MHB83_RS00565 WP_003213500.1 96376..97017(-) (comA) [Bacillus sp. FSL K6-3149]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=985976 MHB83_RS00565 WP_003213500.1 96376..97017(-) (comA) [Bacillus sp. FSL K6-3149]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGGAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714

Multiple sequence alignment