Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MHH61_RS17055 Genome accession   NZ_CP152033
Coordinates   3300925..3301827 (+) Length   300 a.a.
NCBI ID   WP_125586802.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3154     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3295925..3306827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH61_RS17035 (MHH61_17020) - 3296600..3298327 (+) 1728 WP_125586804.1 glycosyltransferase -
  MHH61_RS17040 (MHH61_17025) - 3298324..3298599 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  MHH61_RS17045 (MHH61_17030) sucC 3298776..3299936 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  MHH61_RS17050 (MHH61_17035) sucD 3299959..3300861 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  MHH61_RS17055 (MHH61_17040) dprA 3300925..3301827 (+) 903 WP_125586802.1 DNA-processing protein DprA Machinery gene
  MHH61_RS17060 (MHH61_17045) topA 3302021..3304096 (+) 2076 WP_024424184.1 type I DNA topoisomerase -
  MHH61_RS17065 (MHH61_17050) trmFO 3304167..3305471 (+) 1305 WP_125586800.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHH61_RS17070 (MHH61_17055) xerC 3305534..3306451 (+) 918 WP_024424182.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34102.49 Da        Isoelectric Point: 8.8768

>NTDB_id=985971 MHH61_RS17055 WP_125586802.1 3300925..3301827(+) (dprA) [Bacillus sp. FSL K6-3154]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPMFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSTYGEACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHVYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSFHSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=985971 MHH61_RS17055 WP_125586802.1 3300925..3301827(+) (dprA) [Bacillus sp. FSL K6-3154]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAACTATATATAAATGAAGAAACACACCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATGTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGACTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTCAAGGAAGAGTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTGGCACAT
AAAGAGTGCATCAGGAAAAAAGGGAAAACAATCGGCATTATAGCAGGCGGCTTTCAGCATGTATACCCAAAAGAACATGC
GCAAATGGCTCAATACATGGGTGAACATCATTTGCTTTTGTCAGAGCACCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGGACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCGCTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCTGGATCCATCTTTGATTCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCACAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Legionella pneumophila strain ERS1305867

37.705

100

0.383
  dprA Lactococcus lactis subsp. cremoris KW2

37.716

96.333

0.363

Multiple sequence alignment