Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MHI60_RS15260 Genome accession   NZ_CP152032
Coordinates   2981500..2983233 (+) Length   577 a.a.
NCBI ID   WP_111292270.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2976500..2988233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI60_RS15235 (MHI60_15235) - 2976808..2977068 (+) 261 WP_144484603.1 exodeoxyribonuclease VII small subunit -
  MHI60_RS15240 (MHI60_15240) - 2977058..2977948 (+) 891 WP_095408978.1 polyprenyl synthetase family protein -
  MHI60_RS15245 (MHI60_15245) dxs 2978099..2980000 (+) 1902 WP_095408977.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MHI60_RS15250 (MHI60_15250) - 2979997..2980851 (+) 855 WP_095408976.1 TlyA family RNA methyltransferase -
  MHI60_RS15255 (MHI60_15255) argR 2981017..2981466 (+) 450 WP_024422938.1 transcriptional regulator ArgR -
  MHI60_RS15260 (MHI60_15260) recN 2981500..2983233 (+) 1734 WP_111292270.1 DNA repair protein RecN Machinery gene
  MHI60_RS15265 (MHI60_15265) spoIVB 2983432..2984709 (+) 1278 WP_048239243.1 SpoIVB peptidase -
  MHI60_RS15270 (MHI60_15270) spo0A 2984996..2985799 (+) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  MHI60_RS15275 (MHI60_15275) - 2986256..2987356 (+) 1101 WP_144484601.1 Rap family tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64667.51 Da        Isoelectric Point: 4.8106

>NTDB_id=985908 MHI60_RS15260 WP_111292270.1 2981500..2983233(+) (recN) [Bacillus sp. FSL K6-3200]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISILREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSAFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIHKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=985908 MHI60_RS15260 WP_111292270.1 2981500..2983233(+) (recN) [Bacillus sp. FSL K6-3200]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACAGGGGAAACAGGTGCTGGAAAATCCATCATGATTGACGCTGTCTCGCTTCTCGTGGGAGGAAGAGGTTCTTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTTTGC
GAAGAGCAAGGAATTGATGCGTCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
TATTAATGGAAAGCTTGTCACCATCTCAATTTTACGTGAAGTAGGACGGCTTTTGCTTGATATACATGGTCAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTTGATCAATTTGGGGCAGAAGAAATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTAAGGCAGCTGTCTGAGAACGAGCAGGAAATGGT
GCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCGCAATTAGAGCCAGGAGAAGATGAGAGGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTTCAAAACGCGTATAACGCCTTGCGTAATGAA
CAAGGAGGACTTGATTGGGTTGGCATGTCCTCAAGCGAGCTTGAGCAGGTGTCTGAGATCAACGATGATTTGAAGAAGCT
ATCCGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACCTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATTCAAAATCGAGACAGCCACCTCCAAACGCT
CAAAAATAAACTGGATGCGATGAGCCGTGATGCTCTGCTTGAAGCACTTAATGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCCAAGCAAATTCAAACGGAGCTCAAGGATTTGTATATGGAGAAGTCAGCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCTTTTGGCAGCACAGATTGTCCGCTTTTAGACGGAAAACCTGTCCAGCTCGGAAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCCGGAGGAGAAATCTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCCAAACAAGACGTCACATCCATTATTTTTGATGAGGTTGATACAGGC
GTCAGCGGCAGAGTCGCACAGGCCATTGCCGAAAAAATTCACAAAGTAGCGGCTGGGTCACAAGTGCTCTGCATTACACA
TCTGCCTCAAGTAGCAGCAATGGCCGACACACATCTTTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACAAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACAGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

76.083

100

0.761

Multiple sequence alignment