Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MHI60_RS15075 Genome accession   NZ_CP152032
Coordinates   2950730..2951065 (-) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3200     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2945730..2956065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI60_RS15025 (MHI60_15025) comGC 2945940..2946233 (+) 294 WP_144484628.1 competence type IV pilus major pilin ComGC Machinery gene
  MHI60_RS15030 (MHI60_15030) comGD 2946226..2946672 (+) 447 WP_144484626.1 competence type IV pilus minor pilin ComGD -
  MHI60_RS15035 (MHI60_15035) comGE 2946656..2946970 (+) 315 WP_144484624.1 competence type IV pilus minor pilin ComGE -
  MHI60_RS15040 (MHI60_15040) comGF 2946882..2947409 (+) 528 WP_186437312.1 competence type IV pilus minor pilin ComGF -
  MHI60_RS15045 (MHI60_15045) comGG 2947406..2947789 (+) 384 WP_144484620.1 competence type IV pilus minor pilin ComGG -
  MHI60_RS15050 (MHI60_15050) - 2947849..2948043 (+) 195 WP_024718846.1 YqzE family protein -
  MHI60_RS15055 (MHI60_15055) - 2948077..2948355 (-) 279 WP_223251017.1 DUF3889 domain-containing protein -
  MHI60_RS15060 (MHI60_15060) tapA 2948655..2949182 (+) 528 WP_095408998.1 amyloid fiber anchoring/assembly protein TapA -
  MHI60_RS15065 (MHI60_15065) - 2949235..2949807 (+) 573 WP_144484618.1 signal peptidase I -
  MHI60_RS15070 (MHI60_15070) - 2949862..2950662 (+) 801 WP_111292280.1 TasA family protein -
  MHI60_RS15075 (MHI60_15075) sinR 2950730..2951065 (-) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  MHI60_RS15080 (MHI60_15080) - 2951099..2951263 (-) 165 WP_095408995.1 anti-repressor SinI family protein -
  MHI60_RS15085 (MHI60_15085) - 2951446..2952243 (-) 798 WP_144484616.1 YqhG family protein -
  MHI60_RS15090 (MHI60_15090) - 2952258..2953928 (-) 1671 WP_144484614.1 SNF2-related protein -
  MHI60_RS15095 (MHI60_15095) gcvT 2954490..2955587 (+) 1098 WP_144484612.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=985907 MHI60_RS15075 WP_024422969.1 2950730..2951065(-) (sinR) [Bacillus sp. FSL K6-3200]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=985907 MHI60_RS15075 WP_024422969.1 2950730..2951065(-) (sinR) [Bacillus sp. FSL K6-3200]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment