Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHH54_RS16275 Genome accession   NZ_CP152030
Coordinates   3184844..3185533 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL K6-4563     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3179844..3190533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH54_RS16240 (MHH54_16240) - 3179922..3180404 (-) 483 WP_113387415.1 flagellar protein FlgN -
  MHH54_RS16245 (MHH54_16245) flgM 3180423..3180686 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHH54_RS16250 (MHH54_16250) - 3180766..3181185 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  MHH54_RS16255 (MHH54_16255) comFC 3181242..3181928 (-) 687 WP_003212791.1 ComF family protein Machinery gene
  MHH54_RS16260 (MHH54_16260) - 3181925..3182218 (-) 294 WP_003213271.1 competence protein ComFB -
  MHH54_RS16265 (MHH54_16265) comFA 3182285..3183664 (-) 1380 WP_269457875.1 DEAD/DEAH box helicase Machinery gene
  MHH54_RS16270 (MHH54_16270) - 3183784..3184626 (-) 843 WP_003213402.1 DegV family protein -
  MHH54_RS16275 (MHH54_16275) degU 3184844..3185533 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHH54_RS16280 (MHH54_16280) degS 3185598..3186773 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MHH54_RS16285 (MHH54_16285) - 3186995..3187663 (+) 669 WP_003212936.1 YigZ family protein -
  MHH54_RS16290 (MHH54_16290) - 3187648..3188724 (+) 1077 WP_003213564.1 LCP family protein -
  MHH54_RS16295 (MHH54_16295) - 3188760..3189827 (-) 1068 WP_003212692.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=985815 MHH54_RS16275 WP_008348273.1 3184844..3185533(-) (degU) [Bacillus sp. FSL K6-4563]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=985815 MHH54_RS16275 WP_008348273.1 3184844..3185533(-) (degU) [Bacillus sp. FSL K6-4563]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGATGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment