Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MHH54_RS11125 Genome accession   NZ_CP152030
Coordinates   2225152..2226888 (-) Length   578 a.a.
NCBI ID   WP_137054990.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-4563     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2220152..2231888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH54_RS11110 (MHH54_11110) - 2221031..2222131 (-) 1101 WP_003215741.1 Rap family tetratricopeptide repeat protein -
  MHH54_RS11115 (MHH54_11115) spo0A 2222587..2223390 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  MHH54_RS11120 (MHH54_11120) spoIVB 2223676..2224953 (-) 1278 WP_003215755.1 SpoIVB peptidase -
  MHH54_RS11125 (MHH54_11125) recN 2225152..2226888 (-) 1737 WP_137054990.1 DNA repair protein RecN Machinery gene
  MHH54_RS11130 (MHH54_11130) argR 2226922..2227371 (-) 450 WP_003215836.1 transcriptional regulator ArgR -
  MHH54_RS11135 (MHH54_11135) - 2227531..2228385 (-) 855 WP_106029159.1 TlyA family RNA methyltransferase -
  MHH54_RS11140 (MHH54_11140) dxs 2228382..2230283 (-) 1902 WP_342500255.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MHH54_RS11145 (MHH54_11145) - 2230434..2231324 (-) 891 WP_113387134.1 polyprenyl synthetase family protein -
  MHH54_RS11150 (MHH54_11150) - 2231314..2231574 (-) 261 WP_106029156.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64829.63 Da        Isoelectric Point: 4.8146

>NTDB_id=985794 MHH54_RS11125 WP_137054990.1 2225152..2226888(-) (recN) [Bacillus sp. FSL K6-4563]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEHGIDATDEMMILRRDMNNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=985794 MHH54_RS11125 WP_137054990.1 2225152..2226888(-) (recN) [Bacillus sp. FSL K6-4563]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACAGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCAGGGAAATCCATCATGATTGATGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTGGAGGGGCTTTTTCTTGTGCCAGCAGCTGACCACCCTGTATTTGCTTTA
TGCGAAGAGCATGGAATTGACGCAACGGATGAAATGATGATTCTTCGCCGTGATATGAACAATAACGGGAAAAGCATATG
CCGCATCAATGGCAAGCTCGTTACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAGCACG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTACTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCGTTG
TCACAATATCAAGAAGCATACGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAGGAAAT
GGTGCACCGGTTAGATTTATTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGACGAGAAGC
TTCAAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGAAAT
GAGCAGGGGGGACTTGATTGGGTTGGCATGTCATCAAGCGAGCTCGAGCAGGTTTCTGAGATCAACGACGATCTGAAAAA
GCTATCCGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTCCAAATGCGAAGCATGCTGGATCAATTAG
AGTTCGACCCAGCACGTCTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAGTACGGGACAACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACAGTCACCTGCAGAC
GCTTAAAAACAAACTGGATGCAATGAGCCGTGACGCCCTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAAAAATCAACGTTTGATACATCCTTTTCC
ATTCGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTGCTAGATGGAAAGCCCGTCCAGCTTGGAAAAAACGGAATCGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCCTCGGGTGGAGAAATTT
CACGTGTTATGCTCGCCGTGAAAAGTATCTTCTCGGCCAAACAAGAAGTCACTTCCATTATTTTCGATGAGGTCGATACG
GGCGTAAGCGGCAGAGTTGCACAGGCGATTGCCGAAAAAATTTACAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCACCTCCCGCAAGTAGCAGCAATGGCTGACACGCACCTCTTCATTTCTAAACGCTCTAAAGCAGGCAGAACACTGACAA
GCGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAACTGACA
AAACAGCACGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.74

100

0.747

Multiple sequence alignment