Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACOAKG_RS24265 Genome accession   NZ_CP184261
Coordinates   5411160..5412569 (-) Length   469 a.a.
NCBI ID   WP_420076772.1    Uniprot ID   -
Organism   Streptomyces sp. JL3001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5406160..5417569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOAKG_RS24245 (ACOAKG_24245) - 5406773..5407711 (-) 939 WP_330355609.1 A/G-specific adenine glycosylase -
  ACOAKG_RS24250 (ACOAKG_24250) - 5408334..5408756 (+) 423 WP_420076771.1 hypothetical protein -
  ACOAKG_RS24255 (ACOAKG_24255) - 5409046..5409879 (+) 834 WP_330355611.1 hypothetical protein -
  ACOAKG_RS24260 (ACOAKG_24260) disA 5409955..5411079 (-) 1125 WP_030958303.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ACOAKG_RS24265 (ACOAKG_24265) radA/sms 5411160..5412569 (-) 1410 WP_420076772.1 DNA repair protein RadA Machinery gene
  ACOAKG_RS24270 (ACOAKG_24270) - 5412785..5414596 (+) 1812 WP_406254738.1 BACON domain-containing protein -
  ACOAKG_RS24275 (ACOAKG_24275) - 5414635..5415495 (-) 861 WP_359451246.1 hypothetical protein -
  ACOAKG_RS24280 (ACOAKG_24280) - 5415570..5416502 (+) 933 WP_269644109.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49777.90 Da        Isoelectric Point: 8.0106

>NTDB_id=985746 ACOAKG_RS24265 WP_420076772.1 5411160..5412569(-) (radA/sms) [Streptomyces sp. JL3001]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSALPIRQIDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGALDDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPTGMKVLEVADIGDALRVLPRSRRREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=985746 ACOAKG_RS24265 WP_420076772.1 5411160..5412569(-) (radA/sms) [Streptomyces sp. JL3001]
ATGGCTGCCCGTACCAAGACCACGAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCATGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCGCCGGGCC
GGGTGACGTCGTCCGCGCTGCCGATCAGGCAGATCGACGGGCGGCAGGCGACCGCGCGCTCCACCGGCGTGCCGGAGCTG
GACCGCGTGCTCGGCGGCGGGCTGGTGCCCGGGGCCGTCGTCCTCCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCCT
GCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTGTACGTCACCGGTGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCGGCGCCCTCGACGACCATCTGTACCTCGCGGCCGAGACCGATCTGTCCGCCGTGCTG
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTCATCCTCGACTCGGTGCAGACGGTCGCCTCCCCCGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGGGAGGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGAATGTCCACCCTCC
TCGTGGGGCACGTCACCAAGGACGGCGCCATCGCCGGGCCCCGCCTCCTGGAGCACCTCGTGGACGTGGTCCTCCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGGCTCGTGCGAGGCGTCAAGAACCGCTACGGCGCGACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGACTCTTCCTGACCCGTCGCGCCGAACCGGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTGGCCGAGGTGCAGGCGCTCACCGTCGACTCCCAGATC
CCCTCGCCCCGCCGCACGACGTCCGGTCTGGAGACCTCGCGCGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGGGGCCG
GATCAGCGCCCTCGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGTGTGAAGCTCTCGGAGCCCGCGGCCGACCTCG
CCGTCGCCCTCGCGCTGGCCTCCGCAGCCAGTGACACACCTCTCCCCAAGAACCTGGTCGCGATCGGCGAGGTCGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCAGGCTCGCCGAGGCGCACCGTCTGGGCTTCACGCACGCCCTCGT
CCCGGGCGACCCCGGCAAGATCCCGACGGGCATGAAGGTGCTGGAAGTGGCCGACATAGGAGACGCGCTCCGGGTCCTTC
CGCGCTCGCGTAGGCGAGAGGCCCCACGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus mitis SK321

42.699

96.375

0.412
  radA Streptococcus mitis NCTC 12261

42.699

96.375

0.412
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409