Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MHI39_RS17615 Genome accession   NZ_CP152029
Coordinates   3500768..3502585 (-) Length   605 a.a.
NCBI ID   WP_071976864.1    Uniprot ID   -
Organism   Heyndrickxia sp. FSL K6-6286     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3495768..3507585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI39_RS17590 (MHI39_17590) - 3496283..3496933 (-) 651 WP_058004823.1 GTP pyrophosphokinase family protein -
  MHI39_RS17595 (MHI39_17595) - 3497081..3497653 (+) 573 WP_259546028.1 CYTH domain-containing protein -
  MHI39_RS17600 (MHI39_17600) - 3497776..3498417 (+) 642 WP_259546030.1 lytic transglycosylase domain-containing protein -
  MHI39_RS17605 (MHI39_17605) - 3498596..3498997 (+) 402 WP_259546031.1 globin -
  MHI39_RS17610 (MHI39_17610) - 3498994..3499866 (+) 873 WP_342539858.1 ClpXP adapter SpxH family protein -
  MHI39_RS17615 (MHI39_17615) pepF 3500768..3502585 (-) 1818 WP_071976864.1 oligoendopeptidase F Regulator
  MHI39_RS17620 (MHI39_17620) - 3502672..3503856 (-) 1185 WP_342539859.1 competence protein CoiA family protein -
  MHI39_RS17625 (MHI39_17625) mecA 3504006..3504662 (-) 657 WP_058004816.1 adaptor protein MecA -
  MHI39_RS17630 (MHI39_17630) spxA 3505364..3505759 (-) 396 WP_058004815.1 transcriptional regulator SpxA -
  MHI39_RS17635 (MHI39_17635) - 3506107..3506679 (-) 573 WP_058004814.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69510.91 Da        Isoelectric Point: 4.7313

>NTDB_id=985741 MHI39_RS17615 WP_071976864.1 3500768..3502585(-) (pepF) [Heyndrickxia sp. FSL K6-6286]
MTNTTTKSLPSRNEVQEELTWRLEDIFASDEAWDKEYKEVKELLPSAEKFKGKLGDNAEKLFEALTFQDEVAERLGKLYA
YSHMRSDQDTTNSFYQGLDSRMNSLLAEMGSAFAYLVPEILSIDEDKLASFLNEKSELQVYKHALEQINLQRPHVLSADQ
EALLAQAAEVMNASSNTFGMLNNADLEFPTIKDENGEEVQITHGRYTRFLESADQRVRKEAFEKLYETYGNFKNTFASTL
GGQVKRDNFNAKVRNYQSAREAALSNNNIPESVYDNLVNTVNKNLHLLHKYVKLRKKVLGVDELHMYDLYTPLVKDVEMK
VTYEEAKEMVLKGLAPLGEEYQEILKEGFENRWVDVVENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHSV
HSYYTRKNQPYTYGDYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKEQN
GEALTAEMLTKEYYELNKKYFGGDDIVIDEQIGLEWSRIPHFYYNYYVYQYATGFSAATALSAQILEEGKPAVERYIKNF
LSAGSSDYPIEVLKKAGVDMTSSQPIEAALKVFEEKLNELESLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=985741 MHI39_RS17615 WP_071976864.1 3500768..3502585(-) (pepF) [Heyndrickxia sp. FSL K6-6286]
ATGACTAATACAACAACAAAATCACTACCAAGCCGAAATGAGGTTCAGGAAGAGCTAACTTGGAGATTAGAAGATATTTT
TGCCAGTGATGAAGCTTGGGATAAGGAATATAAAGAAGTAAAGGAATTATTACCAAGTGCAGAGAAATTTAAAGGGAAAC
TAGGAGATAATGCAGAGAAACTTTTCGAAGCATTAACATTTCAAGATGAGGTTGCTGAAAGATTGGGTAAATTATATGCA
TACTCTCATATGCGTAGTGACCAAGATACTACCAATTCATTTTATCAAGGTTTAGATAGCCGCATGAATAGTCTCCTTGC
GGAAATGGGGAGCGCATTTGCTTACTTAGTTCCAGAGATTTTATCTATTGATGAGGATAAACTAGCAAGTTTTCTAAATG
AAAAAAGTGAATTACAAGTGTACAAACATGCACTTGAACAAATTAATCTCCAAAGACCACATGTATTATCTGCAGATCAA
GAAGCATTATTGGCACAAGCAGCAGAAGTGATGAATGCTTCTAGTAATACGTTTGGTATGTTAAATAATGCGGATCTTGA
ATTTCCAACCATTAAAGATGAGAATGGCGAAGAAGTGCAAATCACACATGGTCGTTATACTCGTTTCTTAGAAAGTGCTG
ATCAACGTGTTCGTAAAGAAGCATTTGAAAAGCTATATGAAACATACGGTAATTTCAAAAATACATTTGCTAGTACATTA
GGTGGTCAAGTAAAACGAGATAACTTCAATGCAAAAGTAAGAAATTATCAATCTGCACGTGAAGCGGCATTATCAAACAA
TAATATACCTGAAAGTGTTTATGATAATCTAGTGAATACCGTTAACAAGAATCTTCATCTTTTACATAAGTATGTGAAGC
TGCGTAAAAAGGTATTAGGTGTTGATGAACTACATATGTATGATTTGTATACACCTCTTGTAAAAGATGTAGAAATGAAA
GTAACATATGAAGAAGCAAAAGAAATGGTTTTAAAAGGTCTTGCCCCATTAGGTGAAGAATATCAAGAGATCTTAAAAGA
AGGCTTTGAAAATCGATGGGTTGATGTGGTTGAAAATAAGGGGAAACGGAGTGGTGCCTATTCATCCGGAGCATATGGAA
CAAATCCTTATATTTTGATGAACTGGCAGGACAATGTGAATAATCTTTTTACCTTAGCACATGAATTTGGTCACAGTGTT
CATAGTTATTACACAAGAAAAAATCAGCCATATACGTATGGGGATTACTCAATTTTTGTTGCTGAAGTGGCTTCTACATG
TAATGAAGCTTTACTAAATGATTATTTATTAAAAACGATTGATGATGAGCAAAAGAGAATTTATTTACTTAATCATTACC
TAGAAGGCTTCAGAGGTACAGTTTTCCGCCAAACGATGTTTGCAGAGTTTGAACATTTAATCCATCAAAAAGAACAAAAT
GGAGAAGCATTAACTGCCGAAATGCTAACGAAAGAATATTATGAGCTGAATAAAAAATATTTCGGTGGAGATGATATTGT
AATTGATGAACAAATAGGATTAGAATGGTCACGAATTCCACATTTCTACTACAATTATTACGTTTATCAATATGCAACAG
GTTTTAGTGCTGCAACTGCATTAAGTGCTCAAATTCTTGAAGAAGGGAAACCTGCGGTTGAACGTTATATTAAGAATTTC
TTATCTGCGGGTAGTTCAGATTATCCAATTGAAGTGCTAAAGAAAGCAGGCGTGGATATGACTTCTTCACAACCAATTGA
AGCAGCATTGAAGGTGTTTGAAGAAAAACTTAATGAGCTTGAAAGCTTATTATCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-591)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

98.512

0.491

Multiple sequence alignment