Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHI41_RS16485 Genome accession   NZ_CP152023
Coordinates   3207658..3208347 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL M7-0307     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3202658..3213347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI41_RS16450 (MHI41_16450) - 3202744..3203226 (-) 483 WP_007499977.1 flagellar protein FlgN -
  MHI41_RS16455 (MHI41_16455) flgM 3203245..3203508 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI41_RS16460 (MHI41_16460) - 3203588..3204007 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  MHI41_RS16465 (MHI41_16465) - 3204064..3204786 (-) 723 WP_342494315.1 ComF family protein -
  MHI41_RS16470 (MHI41_16470) - 3204747..3205040 (-) 294 WP_035701582.1 competence protein ComFB -
  MHI41_RS16475 (MHI41_16475) comFA 3205105..3206232 (-) 1128 WP_342494316.1 DEAD/DEAH box helicase Machinery gene
  MHI41_RS16480 (MHI41_16480) - 3206604..3207446 (-) 843 WP_060832692.1 DegV family protein -
  MHI41_RS16485 (MHI41_16485) degU 3207658..3208347 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHI41_RS16490 (MHI41_16490) degS 3208412..3209587 (-) 1176 WP_035389673.1 sensor histidine kinase Regulator
  MHI41_RS16495 (MHI41_16495) - 3209809..3210477 (+) 669 WP_017357860.1 YigZ family protein -
  MHI41_RS16500 (MHI41_16500) - 3210462..3211553 (+) 1092 WP_025208065.1 LCP family protein -
  MHI41_RS16505 (MHI41_16505) - 3211590..3212657 (-) 1068 WP_007499956.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=985412 MHI41_RS16485 WP_008348273.1 3207658..3208347(-) (degU) [Bacillus sp. FSL M7-0307]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=985412 MHI41_RS16485 WP_008348273.1 3207658..3208347(-) (degU) [Bacillus sp. FSL M7-0307]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACACGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment