Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   MHI41_RS11415 Genome accession   NZ_CP152023
Coordinates   2234222..2235292 (-) Length   356 a.a.
NCBI ID   WP_282833860.1    Uniprot ID   -
Organism   Bacillus sp. FSL M7-0307     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2229222..2240292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI41_RS11365 (MHI41_11365) - 2229312..2229884 (-) 573 WP_041091749.1 signal peptidase I -
  MHI41_RS11370 (MHI41_11370) tapA 2229934..2230461 (-) 528 WP_046527018.1 amyloid fiber anchoring/assembly protein TapA -
  MHI41_RS11375 (MHI41_11375) - 2230714..2231040 (+) 327 WP_017367590.1 DUF3889 domain-containing protein -
  MHI41_RS11380 (MHI41_11380) - 2231074..2231274 (-) 201 WP_046343970.1 YqzE family protein -
  MHI41_RS11385 (MHI41_11385) comGG 2231335..2231718 (-) 384 WP_272511702.1 competence type IV pilus minor pilin ComGG -
  MHI41_RS11390 (MHI41_11390) comGF 2231715..2232212 (-) 498 WP_065460694.1 competence type IV pilus minor pilin ComGF -
  MHI41_RS11395 (MHI41_11395) comGE 2232154..2232468 (-) 315 WP_065460696.1 competence type IV pilus minor pilin ComGE -
  MHI41_RS11400 (MHI41_11400) comGD 2232452..2232898 (-) 447 WP_073413947.1 competence type IV pilus minor pilin ComGD -
  MHI41_RS11405 (MHI41_11405) comGC 2232891..2233184 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  MHI41_RS11410 (MHI41_11410) comGB 2233201..2234241 (-) 1041 WP_282833861.1 competence type IV pilus assembly protein ComGB -
  MHI41_RS11415 (MHI41_11415) comGA 2234222..2235292 (-) 1071 WP_282833860.1 competence type IV pilus ATPase ComGA Machinery gene
  MHI41_RS11420 (MHI41_11420) - 2235757..2236629 (-) 873 WP_035390819.1 STAS domain-containing protein -
  MHI41_RS11430 (MHI41_11430) - 2236855..2237235 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  MHI41_RS11435 (MHI41_11435) - 2237448..2237690 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  MHI41_RS11440 (MHI41_11440) - 2237739..2238377 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  MHI41_RS11445 (MHI41_11445) - 2238538..2238711 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  MHI41_RS11450 (MHI41_11450) - 2238736..2239050 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40329.66 Da        Isoelectric Point: 9.0449

>NTDB_id=985395 MHI41_RS11415 WP_282833860.1 2234222..2235292(-) (comGA) [Bacillus sp. FSL M7-0307]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRSVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=985395 MHI41_RS11415 WP_282833860.1 2234222..2235292(-) (comGA) [Bacillus sp. FSL M7-0307]
TTGTATGGTATTGAATATTTGGGACAAGAGCTGCTAGAAGAGGCATGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGGTCATTGGCT
GTGATGCTAAGACGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCGACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACTGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATCCAGTTT
GCCAAAAAACATTTTAATCGAAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACACTGCAT
GCAAAAAATGCAAAAGGAGCTCTTTATCGAATGCTGGAATTTGGAGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGT
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAGTAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

65.254

99.438

0.649

Multiple sequence alignment