Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MHI08_RS16190 Genome accession   NZ_CP152022
Coordinates   3135493..3136890 (-) Length   465 a.a.
NCBI ID   WP_342500201.1    Uniprot ID   -
Organism   Bacillus sp. FSL M7-0791     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3130493..3141890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI08_RS16155 (MHI08_16155) flgL 3130694..3131602 (-) 909 WP_024423617.1 flagellar hook-associated protein FlgL -
  MHI08_RS16160 (MHI08_16160) flgK 3131612..3133132 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  MHI08_RS16165 (MHI08_16165) - 3133148..3133630 (-) 483 WP_224426748.1 flagellar protein FlgN -
  MHI08_RS16170 (MHI08_16170) flgM 3133649..3133912 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI08_RS16175 (MHI08_16175) - 3133992..3134411 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  MHI08_RS16180 (MHI08_16180) comFC 3134468..3135124 (-) 657 WP_241218534.1 ComF family protein Machinery gene
  MHI08_RS16185 (MHI08_16185) - 3135151..3135444 (-) 294 WP_025093967.1 competence protein ComFB -
  MHI08_RS16190 (MHI08_16190) comFA 3135493..3136890 (-) 1398 WP_342500201.1 DEAD/DEAH box helicase Machinery gene
  MHI08_RS16195 (MHI08_16195) - 3137011..3137853 (-) 843 WP_024423625.1 DegV family protein -
  MHI08_RS16200 (MHI08_16200) degU 3138069..3138758 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHI08_RS16205 (MHI08_16205) degS 3138823..3139998 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MHI08_RS16210 (MHI08_16210) - 3140220..3140888 (+) 669 WP_163115661.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53284.23 Da        Isoelectric Point: 9.9831

>NTDB_id=985351 MHI08_RS16190 WP_342500201.1 3135493..3136890(-) (comFA) [Bacillus sp. FSL M7-0791]
MNMDKAMELMRQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCYRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETCRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMRVCIATPRTDVVLELEPRLRKAFQGVTITVLYGGSSQRFQITPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNRGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHEQPLPIPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANKRRILLFVPSIATMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTKSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=985351 MHI08_RS16190 WP_342500201.1 3135493..3136890(-) (comFA) [Bacillus sp. FSL M7-0791]
TTGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGTCATCTGCTCACCGTTGAAACAAAGTGCCCACA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTACCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACATG
TCGAGCCGAATTAACATGGCAGGGAGAGTTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTCCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGGGTCTGTATTGCGACACCTAGAACAGATGTAGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATT
TCAAGGGGTGACAATTACCGTACTTTACGGAGGCAGTTCTCAAAGGTTTCAAATAACACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACAGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTTTGCGATTTCACGAGCAACCATTACCCATAC
CGACCTTTCATTGGATCGGTCATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAATGTGGAGGGGGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTCACGATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGGCGGGTAGGCAGACACCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAAAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(324-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.632

98.065

0.516
  comFA/cflA Streptococcus pneumoniae Rx1

38.497

94.409

0.363
  comFA/cflA Streptococcus pneumoniae D39

38.497

94.409

0.363
  comFA/cflA Streptococcus pneumoniae R6

38.497

94.409

0.363
  comFA/cflA Streptococcus pneumoniae TIGR4

38.095

94.839

0.361

Multiple sequence alignment