Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MHI08_RS11090 Genome accession   NZ_CP152022
Coordinates   2176590..2178323 (-) Length   577 a.a.
NCBI ID   WP_025092992.1    Uniprot ID   A0A5C0WLT9
Organism   Bacillus sp. FSL M7-0791     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2171590..2183323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI08_RS11075 (MHI08_11075) - 2172466..2173566 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  MHI08_RS11080 (MHI08_11080) spo0A 2174023..2174826 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  MHI08_RS11085 (MHI08_11085) spoIVB 2175113..2176390 (-) 1278 WP_025092993.1 SpoIVB peptidase -
  MHI08_RS11090 (MHI08_11090) recN 2176590..2178323 (-) 1734 WP_025092992.1 DNA repair protein RecN Machinery gene
  MHI08_RS11095 (MHI08_11095) argR 2178357..2178806 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  MHI08_RS11100 (MHI08_11100) - 2178970..2179824 (-) 855 WP_025092991.1 TlyA family RNA methyltransferase -
  MHI08_RS11105 (MHI08_11105) dxs 2179821..2181722 (-) 1902 WP_285708888.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MHI08_RS11110 (MHI08_11110) - 2181873..2182763 (-) 891 WP_326483857.1 farnesyl diphosphate synthase -
  MHI08_RS11115 (MHI08_11115) - 2182753..2183013 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64683.50 Da        Isoelectric Point: 4.7728

>NTDB_id=985331 MHI08_RS11090 WP_025092992.1 2176590..2178323(-) (recN) [Bacillus sp. FSL M7-0791]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEDIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=985331 MHI08_RS11090 WP_025092992.1 2176590..2178323(-) (recN) [Bacillus sp. FSL M7-0791]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTTCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGATCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCACCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAATAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGGGAAGTAGGACGGCTTTTGCTTGATATACATGGACAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGTGCAGAAGACATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCCCAAAAGCTAAGGCAGCTGTCTGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGCTTC
AGGAAGAACGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTCCAAAACGCATATAACGCCTTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGTATGTCTTCAAGCGAGCTTGAGCAGGTGTCTGAGATCAACGATGATTTGAAAAAGCT
ATCTGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACCTTCCAAATGCGGAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGCTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAATTAGATGCGATGAGCCGTGATGCCCTGCTCGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCGAAGCAAATTCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTGCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGC
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGCATTACACA
CCTGCCTCAAGTAGCCGCAATGGCTGACACACATCTCTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGTCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCATGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WLT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757

Multiple sequence alignment