Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   R8611_RS07025 Genome accession   NZ_AP026927
Coordinates   1388843..1390075 (-) Length   410 a.a.
NCBI ID   WP_317647849.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700178     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1383843..1395075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8611_RS06995 (PC0174_13890) - 1384030..1384998 (+) 969 WP_000081003.1 NAD(P)/FAD-dependent oxidoreductase -
  R8611_RS07000 (PC0174_13900) whiA 1385032..1385943 (-) 912 WP_000011306.1 DNA-binding protein WhiA -
  R8611_RS07005 (PC0174_13910) - 1385940..1386917 (-) 978 WP_001231069.1 YvcK family protein -
  R8611_RS07010 (PC0174_13920) rapZ 1386914..1387804 (-) 891 WP_000163029.1 RNase adapter RapZ -
  R8611_RS07015 (PC0174_13930) - 1387856..1388236 (-) 381 WP_001140412.1 RidA family protein -
  R8611_RS07020 (PC0174_13940) yihA 1388247..1388834 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  R8611_RS07025 (PC0174_13950) clpX 1388843..1390075 (-) 1233 WP_317647849.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  R8611_RS07030 - 1390107..1390277 (-) 171 WP_000442275.1 hypothetical protein -
  R8611_RS07035 (PC0174_13960) - 1390277..1390783 (-) 507 WP_000162482.1 dihydrofolate reductase -
  R8611_RS07040 (PC0174_13970) - 1390913..1391431 (-) 519 WP_000229874.1 DNA starvation/stationary phase protection protein -
  R8611_RS07045 (PC0174_13980) lytC 1391927..1393432 (-) 1506 WP_078102753.1 choline binding-anchored murein hydrolase LytC -
  R8611_RS07050 (PC0174_13990) tpiA 1393470..1394228 (-) 759 WP_000087897.1 triose-phosphate isomerase -
  R8611_RS07055 (PC0174_14000) - 1394326..1395003 (-) 678 WP_000221618.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45745.30 Da        Isoelectric Point: 4.4240

>NTDB_id=98513 R8611_RS07025 WP_317647849.1 1388843..1390075(-) (clpX) [Streptococcus pneumoniae strain PZ900700178]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLCSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=98513 R8611_RS07025 WP_317647849.1 1388843..1390075(-) (clpX) [Streptococcus pneumoniae strain PZ900700178]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATACTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATTGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTTGCTCCATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.341

100

0.863
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.965

98.049

0.559

Multiple sequence alignment