Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MKY83_RS16960 Genome accession   NZ_CP152015
Coordinates   3275860..3277239 (-) Length   459 a.a.
NCBI ID   WP_142671660.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0266     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3270860..3282239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY83_RS16925 (MKY83_16925) flgL 3271040..3271951 (-) 912 WP_044139340.1 flagellar hook-associated protein FlgL -
  MKY83_RS16930 (MKY83_16930) flgK 3271961..3273481 (-) 1521 WP_044139339.1 flagellar hook-associated protein FlgK -
  MKY83_RS16935 (MKY83_16935) - 3273497..3273979 (-) 483 WP_034660146.1 flagellar protein FlgN -
  MKY83_RS16940 (MKY83_16940) flgM 3273998..3274261 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKY83_RS16945 (MKY83_16945) - 3274341..3274760 (-) 420 WP_044139338.1 TIGR03826 family flagellar region protein -
  MKY83_RS16950 (MKY83_16950) comFC 3274817..3275503 (-) 687 WP_181462031.1 ComF family protein Machinery gene
  MKY83_RS16955 (MKY83_16955) - 3275500..3275793 (-) 294 WP_044139337.1 competence protein ComFB -
  MKY83_RS16960 (MKY83_16960) comFA 3275860..3277239 (-) 1380 WP_142671660.1 DEAD/DEAH box helicase Machinery gene
  MKY83_RS16965 (MKY83_16965) - 3277359..3278201 (-) 843 WP_044139336.1 DegV family protein -
  MKY83_RS16970 (MKY83_16970) degU 3278419..3279108 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MKY83_RS16975 (MKY83_16975) degS 3279173..3280348 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MKY83_RS16980 (MKY83_16980) - 3280570..3281238 (+) 669 WP_003212936.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52475.42 Da        Isoelectric Point: 10.0795

>NTDB_id=985052 MKY83_RS16960 WP_142671660.1 3275860..3277239(-) (comFA) [Bacillus sp. FSL M8-0266]
MNMDKAMELGQHLQSRHLLTAETRCSQSDLDWLEEKGLVIRTPAIERKANGLICCRCGVSKNRYFAHSPCDKCQKDCVYC
RSCIMMGKTTECGFLYEWTGPQMEEACHSELTWQGDLSKGQKRASEKLIEAIKHKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGMKIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMIRDVSRGQLEAVKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQK
HITKKRRVLLFVPSISTMKKVTKVLRKHHLNVEGVSADDPDRKQKVQQFRDYKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=985052 MKY83_RS16960 WP_142671660.1 3275860..3277239(-) (comFA) [Bacillus sp. FSL M8-0266]
TTGAACATGGACAAAGCAATGGAACTAGGGCAACACCTGCAGTCACGCCACCTGCTTACTGCTGAAACAAGATGCTCACA
GTCTGATTTGGATTGGCTGGAGGAGAAAGGGTTAGTTATCCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTTATTT
GCTGCAGATGTGGTGTATCAAAAAATCGGTACTTTGCCCACTCTCCGTGTGACAAGTGTCAAAAAGATTGTGTGTATTGT
AGATCATGCATCATGATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAGCATG
TCACTCGGAATTAACATGGCAGGGAGACCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAAATTGATAGAAGCGATAAAAC
ACAAATCTGATCTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACTGATGTTGTACTTGAACTAGAGCCGCGGCTTAAAAAAGCTTT
TCAAGGAATGAAAATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGTTAGTAATCGCTACAACTC
ACCAGTTGATGAGATATAAACATGCATTTGATGTGCTCATTATAGATGAAGTCGATGCCTTCCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GATAAGAGATGTATCTCGTGGACAACTAGAAGCCGTAAAAATTCCTCTGCGCTTTCACCAACAGCCTTTACCGGTCCCAT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAATCAGCTCCCACCTAAAGTAATGAATTGGATGCAGAAA
CATATTACAAAAAAGAGAAGGGTTTTACTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
GCACCACTTAAATGTAGAAGGGGTGTCTGCTGATGATCCGGACAGGAAACAAAAGGTCCAGCAATTCAGAGATTACAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGCGTAACCATTCCAAATGTGCAAGTAGGGGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCCGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(117-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

54.505

99.129

0.54

Multiple sequence alignment