Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MKX52_RS10860 Genome accession   NZ_CP152014
Coordinates   2139196..2140932 (-) Length   578 a.a.
NCBI ID   WP_144504026.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0422     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2134196..2145932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX52_RS10840 (MKX52_10840) - 2135074..2136174 (-) 1101 WP_251184289.1 Rap family tetratricopeptide repeat protein -
  MKX52_RS10845 (MKX52_10845) - 2136162..2136359 (-) 198 WP_041815709.1 hypothetical protein -
  MKX52_RS10850 (MKX52_10850) spo0A 2136631..2137434 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  MKX52_RS10855 (MKX52_10855) spoIVB 2137720..2138997 (-) 1278 WP_342490687.1 SpoIVB peptidase -
  MKX52_RS10860 (MKX52_10860) recN 2139196..2140932 (-) 1737 WP_144504026.1 DNA repair protein RecN Machinery gene
  MKX52_RS10865 (MKX52_10865) argR 2140966..2141415 (-) 450 WP_012010523.1 transcriptional regulator ArgR -
  MKX52_RS10870 (MKX52_10870) - 2141576..2142430 (-) 855 WP_342490688.1 TlyA family RNA methyltransferase -
  MKX52_RS10875 (MKX52_10875) dxs 2142427..2144328 (-) 1902 WP_342490689.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MKX52_RS10880 (MKX52_10880) - 2144479..2145369 (-) 891 WP_342490690.1 polyprenyl synthetase family protein -
  MKX52_RS10885 (MKX52_10885) - 2145359..2145619 (-) 261 WP_342490691.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64788.56 Da        Isoelectric Point: 4.7769

>NTDB_id=984971 MKX52_RS10860 WP_144504026.1 2139196..2140932(-) (recN) [Bacillus sp. FSL R5-0422]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEQGIDASDEMMILRRDINNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELDQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDTHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=984971 MKX52_RS10860 WP_144504026.1 2139196..2140932(-) (recN) [Bacillus sp. FSL R5-0422]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACGGGGGAAACAGGTGCAGGGAAATCCATCATGATCGATGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAAGCTGAGCTGGAGGGACTTTTTCTTGTACCAGCAGCCGATCACCCTGTATTTGCTTTA
TGCGAGGAGCAAGGAATTGACGCATCGGATGAAATGATGATTCTTCGCCGTGATATTAACAATAACGGGAAAAGCATCTG
CCGCATCAATGGCAAGCTCGTCACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAACATG
ATAACCAATTATTGATGGAGGATGAAAATCATCTGCATTTGCTCGATCAATTTGGTGCAGAAGAAATTGCACCTGCTTTG
TCGCAGTATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAAAATGAGCAAGAAAT
GGTGCACCGGTTAGATTTATTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGACGAGAAGC
TTCAAGAAGAGCGTCATCAGATCAGCAACTACGAAAAGATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAACAGGGGGGACTTGATTGGGTTGGCATGTCATCAAGCGAGCTCGATCAGGTTTCTGAAATCAACGATGATCTGAAAAA
ACTATCCGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTCCAAATGCGAAGCATGCTGGATCAATTAG
AGTTCGACCCTGCACGTCTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAGTACGGGACGACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACACTCATCTGCAGAC
GCTTAAAAACAAACTGGATGCAATGAGCCGTGACGCACTGCTTGAAGCACTTAACGTTTCAGAGCTTCGTAAAAAATGGG
CCAAAAAACTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAGAAGTCAACGTTTGATACATCCTTTTCT
ATTCGGTATGCGCCTTTTAGCAGCACAGATAATCCGCTCCTAGATGGAAAGCCCGTCCAGCTCGGAAAAAACGGAATTGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCGTCTGGTGGAGAAATTT
CACGTGTGATGCTCGCTGTGAAAAGTATCTTCTCAGCCAAACAAGAAGTCACTTCCATTATTTTCGATGAGGTCGATACG
GGTGTAAGTGGCAGAGTTGCACAGGCGATTGCCGAAAAAATTTACAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCACCTCCCGCAAGTAGCAGCAATGGCTGACACGCACCTCTTCATTTCAAAACGCTCTAAAGCTGGTAGAACACTGACAA
GTGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAGCTGACA
AAACAGCACGCAAAAGAATTGCTCCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.913

100

0.749

Multiple sequence alignment