Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MKX52_RS07625 Genome accession   NZ_CP152014
Coordinates   1515362..1516264 (+) Length   300 a.a.
NCBI ID   WP_342491745.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0422     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1510362..1521264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX52_RS07605 (MKX52_07605) - 1511028..1512764 (+) 1737 WP_342491744.1 glycosyltransferase -
  MKX52_RS07610 (MKX52_07610) - 1512761..1513036 (+) 276 WP_012009944.1 FlhB-like flagellar biosynthesis protein -
  MKX52_RS07615 (MKX52_07615) sucC 1513213..1514373 (+) 1161 WP_012009945.1 ADP-forming succinate--CoA ligase subunit beta -
  MKX52_RS07620 (MKX52_07620) sucD 1514396..1515298 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  MKX52_RS07625 (MKX52_07625) dprA 1515362..1516264 (+) 903 WP_342491745.1 DNA-processing protein DprA Machinery gene
  MKX52_RS07630 (MKX52_07630) topA 1516458..1518533 (+) 2076 WP_058014000.1 type I DNA topoisomerase -
  MKX52_RS07635 (MKX52_07635) trmFO 1518604..1519908 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MKX52_RS07640 (MKX52_07640) xerC 1519971..1520888 (+) 918 WP_012009949.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34160.58 Da        Isoelectric Point: 8.8799

>NTDB_id=984964 MKX52_RS07625 WP_342491745.1 1515362..1516264(+) (dprA) [Bacillus sp. FSL R5-0422]
MYNVSERMIFHRLKGLISPSLLIKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPIYPNTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKENWMIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPLRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=984964 MKX52_RS07625 WP_342491745.1 1515362..1516264(+) (dprA) [Bacillus sp. FSL R5-0422]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAATAAAATGGTGGAA
AGTCGATCCCGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAACAATCGACTTCACCC
GCTTAAAACAAGCCGAAGAAAAAGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCATATATCCCAACACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCGTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAACTTGTAAAGGAAAATTGGATGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGACTTGCACAT
AAAGAGTGCATAAGAAATAAAGGGAAAACGATTGGTATTATAGCAGGCGGATTTCAGCATTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTGTCTGAGCATCCACCTTATGTCAAGCCAGAAAAGTGGCATT
TTCCTTTGAGGAATCGTTTAATTAGTGCGCTCACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACTGCCTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCCGTTGCAGGATCAATCTTTGATCCTAATTCTACAGG
TCCAGCCAGACTTATACAGCAGGGAGCTAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGTG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

38.361

100

0.39
  dprA Lactococcus lactis subsp. cremoris KW2

38.542

96

0.37

Multiple sequence alignment