Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R8611_RS02400 Genome accession   NZ_AP026927
Coordinates   475641..476372 (+) Length   243 a.a.
NCBI ID   WP_001866897.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700178     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 470641..481372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8611_RS02375 (PC0174_04660) dnaK 470994..472817 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  R8611_RS02380 (PC0174_04670) - 472830..473183 (+) 354 WP_000115730.1 hypothetical protein -
  R8611_RS02385 (PC0174_04680) dnaJ 473388..474524 (+) 1137 WP_001836079.1 molecular chaperone DnaJ -
  R8611_RS02390 (PC0174_04690) - 474866..475153 (-) 288 WP_000777760.1 hypothetical protein -
  R8611_RS02395 (PC0174_04700) - 475163..475573 (-) 411 WP_001278301.1 HIT family protein -
  R8611_RS02400 (PC0174_04710) pptA 475641..476372 (+) 732 WP_001866897.1 ABC transporter ATP-binding protein Regulator
  R8611_RS02405 (PC0174_04720) - 476369..477418 (+) 1050 WP_001866896.1 ABC transporter permease -
  R8611_RS02410 (PC0174_04730) - 477586..477915 (-) 330 WP_000132572.1 hypothetical protein -
  R8611_RS02415 (PC0174_04740) - 478192..478530 (+) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  R8611_RS02420 (PC0174_04750) comE/blpR 478535..479272 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  R8611_RS02425 (PC0174_04760) - 479286..480626 (+) 1341 WP_001099893.1 sensor histidine kinase -
  R8611_RS02430 (PC0174_04770) blpC 480670..480825 (-) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27030.52 Da        Isoelectric Point: 4.7737

>NTDB_id=98490 R8611_RS02400 WP_001866897.1 475641..476372(+) (pptA) [Streptococcus pneumoniae strain PZ900700178]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTMQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=98490 R8611_RS02400 WP_001866897.1 475641..476372(+) (pptA) [Streptococcus pneumoniae strain PZ900700178]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTATGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTAGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment