Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   R8611_RS01795 Genome accession   NZ_AP026927
Coordinates   350898..351587 (+) Length   229 a.a.
NCBI ID   WP_000518011.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700178     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 345898..356587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8611_RS01770 (PC0174_03440) gpsB 346007..346336 (+) 330 WP_000146522.1 cell division regulator GpsB -
  R8611_RS01780 (PC0174_03450) - 346822..347979 (+) 1158 WP_000711385.1 class I SAM-dependent RNA methyltransferase -
  R8611_RS01785 (PC0174_03460) mapZ 347992..349386 (+) 1395 WP_050076091.1 mid-cell-anchored protein MapZ -
  R8611_RS01790 (PC0174_03470) gndA 349462..350886 (+) 1425 WP_000158781.1 NADP-dependent phosphogluconate dehydrogenase -
  R8611_RS01795 (PC0174_03480) covR 350898..351587 (+) 690 WP_000518011.1 response regulator transcription factor Regulator
  R8611_RS01800 (PC0174_03490) cbpC 351685..352710 (+) 1026 WP_317648000.1 choline-binding protein CbpC -
  R8611_RS01805 (PC0174_03500) - 352729..353604 (+) 876 WP_000771137.1 choline-binding protein CbpJ -
  R8611_RS01810 - 353722..354954 (-) 1233 WP_000765668.1 MFS transporter -
  R8611_RS01815 - 355113..355871 (-) 759 Protein_355 lanthionine synthetase LanC family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26880.19 Da        Isoelectric Point: 6.9836

>NTDB_id=98488 R8611_RS01795 WP_000518011.1 350898..351587(+) (covR) [Streptococcus pneumoniae strain PZ900700178]
MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMMAQDFAEKLSRTKPASVIMIL
DHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRGRDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTR
REYDLLATLMGSKKVLTREQLLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=98488 R8611_RS01795 WP_000518011.1 350898..351587(+) (covR) [Streptococcus pneumoniae strain PZ900700178]
ATGGGGAAACGGATTTTATTACTTGAGAAAGAACGAAATCTAGCTCATTTTTTAAGTTTGGAACTCCAGAAAGAGCAGTA
TCGGGTTGATCTGGTAGAGGAGGGGCAAAAAGCCCTCTCCATGGCTCTTCAGACAGACTATGATTTGATTTTATTGAACG
TTAATCTGGGAGATATGATGGCTCAGGATTTTGCAGAAAAATTGAGTCGAACTAAACCTGCCTCAGTCATCATGATTTTA
GATCATTGGGAAGACTTGCAAGAAGAGCTGGAAGTTGTTCAGCGTTTTGCAGTTTCATACATCTATAAGCCAGTCCTTAT
CGAAAATCTGGTAGCGCGTATTTCGGCGATCTTCCGAGGTCGGGACTTCATTGATCAACACTGCAGTCTGATGAAAGTTC
CAAGGACCTACCGCAATCTTAGGATAGATGTTGAACATCACACGGTTTATCGTGGTGAAGAGATGATTGCTCTGACCCGC
CGTGAGTATGACCTTTTGGCGACACTTATGGGAAGCAAGAAAGTATTGACTCGTGAGCAATTGTTGGAAAGTGTTTGGAA
GTATGAAAGTGCGACCGAGACAAATATCGTAGATGTCTATATCCGCTATCTACGGAGCAAGCTTGATGTTAAAGGCCAAA
AAAGCTACATTAAAACCGTGCGTGGTGTTGGATATACCATGCAAGAATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-226)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.261

100

0.485
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.522

100

0.467

Multiple sequence alignment