Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   NYE28_RS02015 Genome accession   NZ_CP152013
Coordinates   397523..397642 (+) Length   39 a.a.
NCBI ID   WP_033575081.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0443     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 392523..402642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS02000 (NYE28_02000) - 394135..394818 (+) 684 WP_007410267.1 response regulator transcription factor -
  NYE28_RS02005 (NYE28_02005) - 394805..396238 (+) 1434 WP_161936390.1 HAMP domain-containing sensor histidine kinase -
  NYE28_RS02010 (NYE28_02010) rapC 396391..397539 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  NYE28_RS02015 (NYE28_02015) phrC 397523..397642 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NYE28_RS02020 (NYE28_02020) - 397791..397886 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  NYE28_RS02025 (NYE28_02025) - 397981..399345 (-) 1365 WP_059366589.1 aspartate kinase -
  NYE28_RS02030 (NYE28_02030) ceuB 399759..400712 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  NYE28_RS02035 (NYE28_02035) - 400702..401649 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  NYE28_RS02040 (NYE28_02040) - 401643..402401 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4214.93 Da        Isoelectric Point: 8.0284

>NTDB_id=984872 NYE28_RS02015 WP_033575081.1 397523..397642(+) (phrC) [Bacillus sp. FSL R5-0443]
MKLKSKWFVICLAAAAIFTVTGAGQTDQADFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=984872 NYE28_RS02015 WP_033575081.1 397523..397642(+) (phrC) [Bacillus sp. FSL R5-0443]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGACTTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

72.5

100

0.744

Multiple sequence alignment