Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYE28_RS01805 Genome accession   NZ_CP152013
Coordinates   335611..336048 (-) Length   145 a.a.
NCBI ID   WP_342490271.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0443     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 330611..341048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS01780 (NYE28_01780) - 331630..332766 (+) 1137 WP_094031490.1 zinc-dependent alcohol dehydrogenase -
  NYE28_RS01785 (NYE28_01785) - 332781..333215 (+) 435 WP_094031491.1 RDD family protein -
  NYE28_RS01790 (NYE28_01790) - 333288..333611 (+) 324 WP_007409357.1 YckD family protein -
  NYE28_RS01795 (NYE28_01795) - 333715..335151 (+) 1437 WP_076425807.1 family 1 glycosylhydrolase -
  NYE28_RS01800 (NYE28_01800) nin/comJ 335192..335590 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  NYE28_RS01805 (NYE28_01805) nucA/comI 335611..336048 (-) 438 WP_342490271.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYE28_RS01810 (NYE28_01810) hxlB 336407..336964 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  NYE28_RS01815 (NYE28_01815) hxlA 336961..337596 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  NYE28_RS01820 (NYE28_01820) - 337828..338190 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16086.38 Da        Isoelectric Point: 8.4850

>NTDB_id=984869 NYE28_RS01805 WP_342490271.1 335611..336048(-) (nucA/comI) [Bacillus sp. FSL R5-0443]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWIGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=984869 NYE28_RS01805 WP_342490271.1 335611..336048(-) (nucA/comI) [Bacillus sp. FSL R5-0443]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGATCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634

Multiple sequence alignment