Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NYE28_RS01800 Genome accession   NZ_CP152013
Coordinates   335192..335590 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0443     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 330192..340590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS01775 (NYE28_01775) - 330363..331565 (+) 1203 WP_069007411.1 GTP-binding protein -
  NYE28_RS01780 (NYE28_01780) - 331630..332766 (+) 1137 WP_094031490.1 zinc-dependent alcohol dehydrogenase -
  NYE28_RS01785 (NYE28_01785) - 332781..333215 (+) 435 WP_094031491.1 RDD family protein -
  NYE28_RS01790 (NYE28_01790) - 333288..333611 (+) 324 WP_007409357.1 YckD family protein -
  NYE28_RS01795 (NYE28_01795) - 333715..335151 (+) 1437 WP_076425807.1 family 1 glycosylhydrolase -
  NYE28_RS01800 (NYE28_01800) nin/comJ 335192..335590 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  NYE28_RS01805 (NYE28_01805) nucA/comI 335611..336048 (-) 438 WP_342490271.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYE28_RS01810 (NYE28_01810) hxlB 336407..336964 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  NYE28_RS01815 (NYE28_01815) hxlA 336961..337596 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  NYE28_RS01820 (NYE28_01820) - 337828..338190 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=984868 NYE28_RS01800 WP_007609299.1 335192..335590(-) (nin/comJ) [Bacillus sp. FSL R5-0443]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=984868 NYE28_RS01800 WP_007609299.1 335192..335590(-) (nin/comJ) [Bacillus sp. FSL R5-0443]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCCAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment